Factsheet for TraesCS5A01G178900.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS3A01G362900.1
TraesCS3B01G395300.2
TraesCS3D01G356600.1
TraesCS4A01G163100.1
TraesCS4B01G150300.3
TraesCS4D01G160000.1
TraesCS6A01G161300.1
TraesCS6A01G242900.1
TraesCS6A01G412800.1
TraesCS6B01G190100.1
TraesCS6B01G281300.1
TraesCS6B01G462100.1
TraesCS6D01G151600.1
TraesCS6D01G225200.2
TraesCS6D01G397000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	TraesCS3A01G362900.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS3B01G395300.2	AT1G17440.1	17340043
AT1G50300.1	TraesCS3D01G356600.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS6A01G161300.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS6B01G190100.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS6D01G151600.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS4A01G163100.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS4B01G150300.3	AT1G27720.1	17340043
AT1G50300.1	TraesCS4D01G160000.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS6A01G242900.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS6B01G281300.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS6D01G225200.2	AT1G27720.1	17340043
AT1G50300.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT1G50300.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT1G50300.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT1G50300.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT1G50300.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G176600.1	Wheat	nucleus	94.59	98.47
TraesCS5D01G183400.3	Wheat	nucleus	97.54	97.54
HORVU5Hr1G054500.18	Barley	nucleus	93.86	97.45
Os09t0299500-01	Rice	nucleus	32.68	83.12
Zm00001d021426_P002	Maize	nucleus	76.17	79.49
Os07t0296200-01	Rice	nucleus	76.9	79.44
EER99320	Sorghum	nucleus	74.2	77.04
PGSC0003DMT400048896	Potato	nucleus	64.62	67.96
AT1G50300.1	Thale cress	nucleus	61.92	67.74
CDY67548	Canola	nucleus	63.15	67.63
CDY03594	Canola	nucleus	62.9	67.55
Solyc11g040050.1.1	Tomato	nucleus	64.37	67.35
Bra014245.1-P	Field mustard	nucleus	62.65	67.11
CDY42510	Canola	nucleus	62.65	66.58
KRH75898	Soybean	nucleus	31.2	66.15
KRH62947	Soybean	nucleus	22.85	65.96
Bra018839.1-P	Field mustard	nucleus	60.93	65.78
CDY22787	Canola	nucleus	60.69	65.52
VIT_01s0010g01410.t01	Wine grape	nucleus	66.58	65.46
KRH24217	Soybean	nucleus	60.44	64.4
KRH29220	Soybean	nucleus	60.69	63.99
GSMUA_Achr8P27040_001	Banana	cytosol	14.74	58.25
GSMUA_Achr8P27030_001	Banana	cytosol	16.71	45.64
GSMUA_Achr6P27180_001	Banana	nucleus	66.83	44.52

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00641
ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209	EnsemblPlantsGene:TraesCS5A01G178900
EnsemblPlants:TraesCS5A01G178900.3	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	TIGR:cd12534	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:376992156..376994591

Molecular Weight (calculated)

45297.0 Da

IEP (calculated)

8.770

GRAVY (calculated)

-1.204

Length

407 amino acids

Sequence
(BLAST)

001: MAGYMSRGPP NGSIYVCNLP PGTDETMLAE YFGTIGLLKV WVLPDLSFPL VISQQKDKRT GHPKIWIYRD KVTNEPKGDA TVTYEDPHAA SAAVEWFNNK
101: DFHGSIIQVH IAESKNKDTV DNFTNVSVDA EIVGQDELDN GSGRGRGRGD GPAKAWQQDG DWMCPNTSCG NVNFAFRGVC NRCGASRPAG VSGSGGGGGR
201: GRGRGSDDAR GSRAAAAVGG PPGLFGPNDW PCTMCGNVNW AKRTKCNVCN TSRPGHNEGG VRGGRGGGFK ELDEEELEEV RRRRKEAEED DGEMYDEFGN
301: LKKKFRAKSY QTESTPALPG SGRAGWEVEH RGSTEREGRE RSRDRGRDDY DERESRNRDR GSHGRERRRS RSRSRDREKE RGRDRGRDRG SERSWERGTE
401: RERDRYR

Best Arabidopsis Sequence Match ( AT1G50300.2 )
(BLAST)

001: MAESKNKNAG DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP
101: GKQPSGAPTG LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD
201: TRPAVAAGRA GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.