Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G150300.3 | Wheat | nucleus | 97.64 | 97.29 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 95.51 | 96.54 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 89.95 | 87.57 |
| Os03t0441000-01 | Rice | nucleus | 68.79 | 71.06 |
| OQU92338 | Sorghum | nucleus | 68.09 | 63.93 |
| Zm00001d029598_P003 | Maize | nucleus | 65.84 | 60.02 |
| CDX71498 | Canola | cytosol | 7.45 | 59.43 |
| CDX71499 | Canola | nucleus | 7.45 | 39.62 |
| CDY58727 | Canola | peroxisome | 4.61 | 39.39 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 39.6 | 38.15 |
| Bra033662.1-P | Field mustard | nucleus | 34.52 | 37.87 |
| CDY46486 | Canola | nucleus, plastid | 3.9 | 37.5 |
| CDY22365 | Canola | nucleus | 34.28 | 37.47 |
| Bra035961.1-P | Field mustard | nucleus | 33.57 | 36.46 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 39.6 | 36.18 |
| CDY25235 | Canola | nucleus | 33.57 | 36.09 |
| CDY30789 | Canola | mitochondrion | 34.4 | 35.75 |
| Solyc04g078050.2.1 | Tomato | nucleus | 38.89 | 35.22 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 34.52 | 34.72 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 33.92 | 34.25 |
| AT5G43130.2 | Thale cress | nucleus | 34.04 | 33.8 |
| KRH61389 | Soybean | nucleus | 35.93 | 33.22 |
| KRH15434 | Soybean | nucleus | 35.82 | 32.41 |
| CDY68956 | Canola | nucleus | 20.92 | 32.18 |
| KRH52077 | Soybean | nucleus | 35.22 | 31.94 |
| KRH05606 | Soybean | mitochondrion | 35.7 | 30.94 |
| AT1G27720.1 | Thale cress | nucleus | 25.65 | 30.14 |
| CDY60273 | Canola | nucleus | 24.82 | 29.25 |
| CDY03944 | Canola | nucleus | 25.89 | 25.76 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 23.52 | 24.78 |
| PGSC0003DMT400055395 | Potato | nucleus | 15.13 | 21.84 |
Protein Annotations
| MapMan:15.3.5.3.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 |
| InterPro:RST | InterPro:TAF4 | EnsemblPlantsGene:TraesCS4D01G160000 | EnsemblPlants:TraesCS4D01G160000.1 | TIGR:cd08045 | SEG:seg |
Description
No Description!
Coordinates
chr4D:+:233077650..233106157
Molecular Weight (calculated)
92513.0 Da
IEP (calculated)
10.025
GRAVY (calculated)
-0.832
Length
846 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIMKLLED DEEDESMHSG ADVEAFTAAL NREVEGSASS SSSAASAFSF QPLDHAAGTL PQKSNPVVNN SHGQWQGSVK NDSGNQESQQ QEKKHLYCKK
101: EQSSGPEAVP IGADNKQLHS NTQIECFQLK VKREPGNNAQ QSTVGQQQPM KQIKSQQPPG TNQTNSSPAM VGKPPVVTFH MLIPILRRYL DKDRDIQVQS
201: IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNPPANP SSYSMSSQVP GQQNESPRPP QFSSGQMQSN MGYAASEGNL QMPNETGNMS
301: DRKGLQMLQS RPPNIHSIPL QATQDHVQRP QTFLPALGAN NIHSCQFPQS VGGPIAPLRP QMTDSSQRGQ SVQGGVASVL GSVATRPALQ NNQPSQQQPN
401: KEQKTNSFTP TVHMNKETAN QPSESAQSSF AALNAKQVNP GLLSSKVGGV LENQSCTLAI HKSLTTRSSS QPHPSYGTPA ELNMQIQPST QAPPSGAASK
501: TPQKKPSAGQ KKPLDVIGSS PPPSGKKQKG SGGFHDQSID QLNDVTAVSG VNLREEEEQL FSAPKEESRV SEAARKVVQL EEERLILQKG PLTKKLAEIM
601: RKYNLKSIGC DVERCLSMCV EERLRGFISN TIRLSKQRVD VEKSRHHYYP LSSDVRSHIL RVNREAREQW DRKLAADANR IRKQSDGDDN SVVSSEKDKA
701: ESRGTSKHAK TYKEEDDKMR TTAANAAVRV AAGGDDMLSK WQLLAEKNKL RGEGGDGSSD SLPGIMSPHK LSPKAGKGSR EQQEIEKRGY FSMLGPGGVR
801: RSAHMKVARS IMVKDVVAAL EREHQMSKSS LLFRLHGRQS TEPASK
101: EQSSGPEAVP IGADNKQLHS NTQIECFQLK VKREPGNNAQ QSTVGQQQPM KQIKSQQPPG TNQTNSSPAM VGKPPVVTFH MLIPILRRYL DKDRDIQVQS
201: IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNPPANP SSYSMSSQVP GQQNESPRPP QFSSGQMQSN MGYAASEGNL QMPNETGNMS
301: DRKGLQMLQS RPPNIHSIPL QATQDHVQRP QTFLPALGAN NIHSCQFPQS VGGPIAPLRP QMTDSSQRGQ SVQGGVASVL GSVATRPALQ NNQPSQQQPN
401: KEQKTNSFTP TVHMNKETAN QPSESAQSSF AALNAKQVNP GLLSSKVGGV LENQSCTLAI HKSLTTRSSS QPHPSYGTPA ELNMQIQPST QAPPSGAASK
501: TPQKKPSAGQ KKPLDVIGSS PPPSGKKQKG SGGFHDQSID QLNDVTAVSG VNLREEEEQL FSAPKEESRV SEAARKVVQL EEERLILQKG PLTKKLAEIM
601: RKYNLKSIGC DVERCLSMCV EERLRGFISN TIRLSKQRVD VEKSRHHYYP LSSDVRSHIL RVNREAREQW DRKLAADANR IRKQSDGDDN SVVSSEKDKA
701: ESRGTSKHAK TYKEEDDKMR TTAANAAVRV AAGGDDMLSK WQLLAEKNKL RGEGGDGSSD SLPGIMSPHK LSPKAGKGSR EQQEIEKRGY FSMLGPGGVR
801: RSAHMKVARS IMVKDVVAAL EREHQMSKSS LLFRLHGRQS TEPASK
001: MKLQKMSSKE TPWVEKTVDP VNHNLRLARV TDLLRTVVDH QPGKKTHCLN LHYKLKRKEL TMEEFMRQLR DLVGDQIIRS VISQLPQLKP GNMGIKVPGR
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV
Arabidopsis Description
TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.