Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05606 | Soybean | mitochondrion | 94.01 | 90.06 |
| KRH61389 | Soybean | nucleus | 62.78 | 64.15 |
| KRH52077 | Soybean | nucleus | 63.85 | 63.99 |
| CDX71498 | Canola | cytosol | 6.84 | 60.38 |
| CDX71499 | Canola | nucleus | 8.98 | 52.83 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 50.05 | 50.54 |
| Solyc04g078050.2.1 | Tomato | nucleus | 47.38 | 47.43 |
| Bra035961.1-P | Field mustard | nucleus | 39.14 | 46.98 |
| Bra033662.1-P | Field mustard | nucleus | 37.54 | 45.53 |
| AT5G43130.2 | Thale cress | nucleus | 41.07 | 45.07 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 3.21 | 44.12 |
| Os03t0441000-01 | Rice | nucleus | 32.51 | 37.12 |
| AT1G27720.1 | Thale cress | nucleus | 28.34 | 36.81 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 32.83 | 36.68 |
| KXG31790 | Sorghum | nucleus | 28.56 | 36.18 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 32.73 | 36.04 |
| Os02t0654400-01 | Rice | nucleus | 27.91 | 35.85 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 32.41 | 35.82 |
| OQU92338 | Sorghum | nucleus | 34.33 | 35.63 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 32.19 | 34.64 |
| Zm00001d039729_P004 | Maize | nucleus | 28.34 | 34.28 |
| Zm00001d029598_P003 | Maize | nucleus | 33.37 | 33.62 |
| PGSC0003DMT400055395 | Potato | nucleus | 20.64 | 32.94 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 27.7 | 32.7 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 27.59 | 32.41 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 27.49 | 32.33 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 27.59 | 30.79 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 25.78 | 30.01 |
| Zm00001d039731_P002 | Maize | nucleus | 13.37 | 23.76 |
Protein Annotations
| EntrezGene:100795389 | MapMan:15.3.5.3.4 | EMBL:ACUP02008593 | EnsemblPlantsGene:GLYMA_14G0877002 | GO:GO:0001075 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0045944 | GO:GO:0051123 | UniProt:K7M5P3 | EnsemblPlants:KRH15434 |
| ProteinID:KRH15434 | ProteinID:KRH15434.1 | ProteinID:KRH15435.1 | PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 |
| PANTHER:PTHR15138:SF14 | InterPro:RST | InterPro:TAF4 | UniParc:UPI000295DEE6 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr14:-:7856127..7865745
Molecular Weight (calculated)
101941.0 Da
IEP (calculated)
9.150
GRAVY (calculated)
-0.796
Length
935 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIMKLLE DDEDETMHSG VDVEAFQAAL NRDIGGAGST SQFSGSDAVL SQGSNNISSQ SLSQWPTSNH DTQTDCQKQE SKTAQQQEQP SSEVELKQHG
101: SLAEQLQHVA SQDINTPHLS QKQSQDECHQ APAVQVSLPN SQAIGIQNSG KDPVLNNEVV KNHNPSSESQ YAKLQQMSNQ QATVSEQPSS QGNRSTSKQV
201: PFGMLLPILL PQLAKDRAMQ LQTLFAKLKK EEIPKDSFVR LMKGIVGDQM LRLALAKVQV QPQIRPNQAS AGQQHPMRMP TVGSGARQLN DPHALAQMHQ
301: RSMNAAVDQS RMGSSAGHTM ESNARKSQEL DVKLESQGLQ PSQLTSSSSN TVGQEIERTS VHIQGLNKQQ QQHLHFPSAY GNSGVNYNPF SGTTSSSTSS
401: IKSQSHDSHM SQILHQSIGS NHHLSGSTHG LNVIGMPKLE QQNSFNDPKR LPGGSVSPAV NNTVSQQTKN AWQPSTNKEQ NLGLMSSVSY VKKEPSDLST
501: EQQNRHSLSK LHGYSPVNSA QLEQGGASQG TVKDEFSRGQ APPSMPPTST GLLPQSSASP SVMTQLDPSV SLSSQIPSNA SGIGARTSLK KPAAAQKKPH
601: EALGSSPPPA NKKQKTSGGS VEQSIEQLND VTAVSGVDLR EEEEQLFSGP KEDSRVSEAS RKAVQEEEER LILQKAPLQK KLIDIMAKCG LKGMSNDVEK
701: CLSLCVEERM RGLISNLIRI SKQRVDFEKT RHRTVVTSDV RQQIMTINRK VREEWDKKQA EAEKIRKLND VDSNTGLDGD KEKDDGRGKS IKVNKEEDEK
801: MRTNAANVAA RAAYGGDDML SKWQLMAEQA KQKREGGVDV LSGSQPAKDV NRKFLSTSGR STKDNQEGEK KGSSTFIASS VARKLGRSHA MALQTRVARS
901: ISVKDVIAVL EREPQMSKSP LMHRLYERIH SDAPV
101: SLAEQLQHVA SQDINTPHLS QKQSQDECHQ APAVQVSLPN SQAIGIQNSG KDPVLNNEVV KNHNPSSESQ YAKLQQMSNQ QATVSEQPSS QGNRSTSKQV
201: PFGMLLPILL PQLAKDRAMQ LQTLFAKLKK EEIPKDSFVR LMKGIVGDQM LRLALAKVQV QPQIRPNQAS AGQQHPMRMP TVGSGARQLN DPHALAQMHQ
301: RSMNAAVDQS RMGSSAGHTM ESNARKSQEL DVKLESQGLQ PSQLTSSSSN TVGQEIERTS VHIQGLNKQQ QQHLHFPSAY GNSGVNYNPF SGTTSSSTSS
401: IKSQSHDSHM SQILHQSIGS NHHLSGSTHG LNVIGMPKLE QQNSFNDPKR LPGGSVSPAV NNTVSQQTKN AWQPSTNKEQ NLGLMSSVSY VKKEPSDLST
501: EQQNRHSLSK LHGYSPVNSA QLEQGGASQG TVKDEFSRGQ APPSMPPTST GLLPQSSASP SVMTQLDPSV SLSSQIPSNA SGIGARTSLK KPAAAQKKPH
601: EALGSSPPPA NKKQKTSGGS VEQSIEQLND VTAVSGVDLR EEEEQLFSGP KEDSRVSEAS RKAVQEEEER LILQKAPLQK KLIDIMAKCG LKGMSNDVEK
701: CLSLCVEERM RGLISNLIRI SKQRVDFEKT RHRTVVTSDV RQQIMTINRK VREEWDKKQA EAEKIRKLND VDSNTGLDGD KEKDDGRGKS IKVNKEEDEK
801: MRTNAANVAA RAAYGGDDML SKWQLMAEQA KQKREGGVDV LSGSQPAKDV NRKFLSTSGR STKDNQEGEK KGSSTFIASS VARKLGRSHA MALQTRVARS
901: ISVKDVIAVL EREPQMSKSP LMHRLYERIH SDAPV
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.