Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60273 | Canola | nucleus | 45.0 | 45.13 |
| AT5G43130.2 | Thale cress | nucleus | 49.44 | 41.78 |
| CDY03944 | Canola | nucleus | 47.64 | 40.35 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 44.58 | 39.98 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 38.47 | 29.91 |
| KRH61389 | Soybean | nucleus | 37.36 | 29.4 |
| KRH52077 | Soybean | nucleus | 37.78 | 29.15 |
| Solyc04g078050.2.1 | Tomato | nucleus | 37.08 | 28.59 |
| KRH15434 | Soybean | nucleus | 36.81 | 28.34 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 2.64 | 27.94 |
| KRH05606 | Soybean | mitochondrion | 36.39 | 26.84 |
| KXG31790 | Sorghum | nucleus | 27.08 | 26.42 |
| Os03t0441000-01 | Rice | nucleus | 29.86 | 26.25 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 30.42 | 26.16 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 30.56 | 25.91 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 30.14 | 25.65 |
| Zm00001d039729_P004 | Maize | nucleus | 27.36 | 25.49 |
| Os02t0654400-01 | Rice | nucleus | 25.56 | 25.27 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 29.72 | 24.63 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 26.67 | 24.15 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 26.67 | 24.12 |
| OQU92338 | Sorghum | nucleus | 30.0 | 23.97 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 26.25 | 23.86 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 26.81 | 23.03 |
| Zm00001d029598_P003 | Maize | nucleus | 28.89 | 22.41 |
| Zm00001d039731_P002 | Maize | nucleus | 13.47 | 18.44 |
| PGSC0003DMT400055395 | Potato | nucleus | 13.47 | 16.55 |
Protein Annotations
| MapMan:15.3.5.3.4 | EntrezGene:839665 | ProteinID:AAF24960.1 | ProteinID:AEE30869.1 | ProteinID:ANM57719.1 | ProteinID:ANM57720.1 |
| ProteinID:ANM57724.1 | ArrayExpress:AT1G27720 | EnsemblPlantsGene:AT1G27720 | RefSeq:AT1G27720 | TAIR:AT1G27720 | RefSeq:AT1G27720-TAIR-G |
| EnsemblPlants:AT1G27720.1 | TAIR:AT1G27720.1 | EMBL:AY457043 | Unigene:At.66874 | ncoils:Coil | GO:GO:0001075 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003713 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008134 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0045944 | GO:GO:0051123 | RefSeq:NP_001320204.1 | RefSeq:NP_001320205.1 | RefSeq:NP_001320209.1 | RefSeq:NP_174093.3 |
| PFAM:PF05236 | PFAM:PF12174 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009049 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR15138 |
| PANTHER:PTHR15138:SF14 | UniProt:Q6SJR1 | InterPro:RST | InterPro:TAF4 | Symbol:TAF4 | UniParc:UPI0000223F0F |
| SEG:seg | : | : | : | : | : |
Description
TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
Coordinates
chr1:-:9643351..9647376
Molecular Weight (calculated)
80645.8 Da
IEP (calculated)
9.962
GRAVY (calculated)
-0.822
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEGSNL KSINNTTGNE SEKPQPRYMK LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP
101: GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ
201: GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK
301: NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD
401: SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV
501: HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK
601: NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE
701: PQMSRSTLLY RVYNRICSDV
101: GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ
201: GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK
301: NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD
401: SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV
501: HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK
601: NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE
701: PQMSRSTLLY RVYNRICSDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.