CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX81826
CDX87098
CDY00904
CDY03594
CDY05378
CDY05473
CDY19814
CDY21749
CDY22214
CDY22787
CDY26245
CDY41320
CDY42510
CDY48302
CDY60164
CDY67548
CDY69783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	CDX81826	AT1G17440.1	17340043
AT1G27720.1	CDY21749	AT1G17440.1	17340043
AT1G27720.1	CDY26245	AT1G17440.1	17340043
AT1G27720.1	CDY48302	AT1G17440.1	17340043
AT1G27720.1	CDY03594	AT1G50300.1	17340043
AT1G27720.1	CDY22787	AT1G50300.1	17340043
AT1G27720.1	CDY42510	AT1G50300.1	17340043
AT1G27720.1	CDY67548	AT1G50300.1	17340043
AT1G27720.1	CDY00904	AT3G10070.1	17340043
AT1G27720.1	CDY22214	AT3G10070.1	17340043
AT1G27720.1	CDY41320	AT3G10070.1	17340043
AT1G27720.1	CDY60164	AT3G10070.1	17340043
AT1G27720.1	CDX75423	AT4G34340.1	17340043
AT1G27720.1	CDY69783	AT4G34340.1	17340043
AT1G27720.1	CDX87098	AT5G25150.1	17340043
AT1G27720.1	CDY05378	AT5G25150.1	17340043
AT1G27720.1	CDY05473	AT5G25150.1	17340043
AT1G27720.1	CDY19814	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60273	Canola	nucleus	68.0	80.5
CDX71498	Canola	cytosol	6.94	55.66
AT1G27720.1	Thale cress	nucleus	40.35	47.64
CDY46486	Canola	nucleus, plastid	4.71	45.45
CDX71499	Canola	nucleus	8.47	45.28
GSMUA_Achr4P14200_001	Banana	cytosol	3.18	39.71
CDY22365	Canola	nucleus	35.06	38.5
CDY30789	Canola	mitochondrion	35.18	36.73
CDY25235	Canola	nucleus	34.0	36.72
CDX71497	Canola	plastid	3.88	32.35
CDY68956	Canola	nucleus	20.71	32.0
CDY58727	Canola	peroxisome	3.29	28.28
Os03t0441000-01	Rice	nucleus	25.76	26.74
TraesCS4B01G150300.3	Wheat	nucleus	26.12	26.15
TraesCS4A01G163100.1	Wheat	nucleus	25.65	26.05
TraesCS4D01G160000.1	Wheat	nucleus	25.76	25.89
Os02t0654400-01	Rice	nucleus	21.41	25.0
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	25.53	24.97
KXG31790	Sorghum	nucleus	21.53	24.8
OQU92338	Sorghum	nucleus	25.65	24.2
Zm00001d039729_P004	Maize	nucleus	21.76	23.93
TraesCS6B01G281300.1	Wheat	nucleus	22.0	23.52
HORVU6Hr1G062340.1	Barley	nucleus	21.88	23.48
TraesCS6A01G242900.1	Wheat	nucleus	21.88	23.37
Zm00001d029598_P003	Maize	nucleus	25.06	22.95
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	22.24	22.55
Zm00001d039731_P002	Maize	nucleus	10.94	17.68

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078ETL4	EnsemblPlants:CDY03944	ProteinID:CDY03944	ProteinID:CDY03944.1	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00117453001	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:RST
InterPro:TAF4	UniParc:UPI0004EDC34F	SEG:seg	:	:	:

Description

BnaC07g11690D

Coordinates

chrLK031947:-:972777..977496

Molecular Weight (calculated)

95064.0 Da

IEP (calculated)

9.640

GRAVY (calculated)

-0.694

Length

850 amino acids

Sequence
(BLAST)

001: MDPSLLKLLE EDDEDESMHS KEDVDAFQAS LIREIEGGNH SWSQQFAAWN NGITQDANTN KLHILESTQM KEQQQQSVLG SQDRELKPED ESPVQHNHNL
101: PQYHLQPGGL SENPSHVPQA SDLHISVQRA HGLEQPVGSV NLGPTQLQVG ELFRLLRPQV DKDRGTQLNT LFYKFKSNEV TKESFLRQAR NILGERMILW
201: AVRKLQQQVS SSFGISFLCR SSNNFHVGSV SMISLVKIEP CICKLSQEKP RKSSRKLIMV TTKSQERHVR AKFFISRFYQ IAPTMISHGF PDLILPYFSQ
301: LDLKIKGSVY ELGNKGVKVP DGPNHCREPF TSADQSLIQS LTEGISAKKS DTCGSHDNQL HSTSSDTLSS SASVHGLHNS ERPVSVNGPA MVHGGHIFPN
401: QNNSSLPLNP APCQGSVTKD QTMSNDQTVA HVKQKLTDQS FDQVRKPCPV VRQDVSNVPM EQRNGNPRRS DDDLLKQSSE MVLSAPTTHA NFASPSVKTQ
501: LDSSTMVNFS APAATILPGT IVRTTQGQKK TLEAQGSSLP PLSKRQKLCE TSLAGSDKKF NDVTELSGIN LMEEERELLS SLPKKDSRVF KSLRRVVHEE
601: EGRTILQKVP LQRKLAEIMA KSGIKHIKDD VERCLSLCVE ERMRVLLSNI IRTSKQRTNP EKCRNRICIT SDIRKQINEM NQKEKDEQER KHGGEEKLKN
701: DTAKEDKRSE QVKADKEQAE KRAKAANDAA LASVGGDNVF SKWKLMAEAR QKPSSETRRN AKKLSGGQRL GKKNHGSPKV VRSISVKDVI AVVEKEPQMS
801: RSTLLYRLYD RICSYVPTQD KTEKLLISKT SLSNIFVSSY STVSDTITKS

Best Arabidopsis Sequence Match ( AT1G27720.5 )
(BLAST)

001: MSSKETPWVE KTVDPVNHNL RLARVTDLLR TVVDHQPGKK THCLNLHYKL KRKELTMEEF MRQLRDLVGD QIIRSVISQL PQLKPGNMGI KVPGRSNHDK
101: VSKSAEFTAQ ESDPREVHVN QLSSTTSGTL NSSTTVQGLN KHPEQHMQLP SSSFHMDTKS GSLNPYPGTN VTSPGSSSRA KLPDFQHREN NQNVGIASVG
201: GPTKSTINMT TVPKFERPTF VNGPSRVQDG PISDFPKNSS FPLYSAPWQG SVTKDHTVGP SSSVIHVEHK LIDQSFEQAH KPRYLVQQGV TNVPLKQKNA
301: IPISSNDDLE KQSSKMGLFT STTSASSVFP SMTTQLDSST MVNMPAPSET IPKIANVTVT PKMPSVGQKK PLEALGSSLP PSRKKQKICG TSSDESIEKF
401: NDVTAVSGIN LREEEKQLLD SGPKKNDRVS KAYRRLVHGE EERTLLQKIP LQRKLTEIMG KSGLKHIDHD VERCLSLCVE ERMRGLLFNI IRISKQRTDA
501: EKCRNRTFIT SDIRKEINEM NQKVKEEWEK KHSGEEKNKE NDTEKEDQRS NEVKANKKDE DKERAKAANV AVRAAVGGDD RFSKWKLMAE ARQRSSPGPG
601: RNSKKLSGGT QFGKNQGLPK VVRSISVKDV IAVVEKEPQM SRSTLLYRVY NRICSDV

Arabidopsis Description

TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.