CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46486	Canola	nucleus, plastid	41.51	75.0
CDY22365	Canola	nucleus	92.45	18.99
CDY30789	Canola	mitochondrion	89.31	17.44
CDY25235	Canola	nucleus	84.91	17.15
Os02t0654400-01	Rice	nucleus	49.69	10.85
KXG31790	Sorghum	nucleus	48.43	10.43
CDY60273	Canola	nucleus	45.28	10.03
Zm00001d039729_P004	Maize	nucleus	48.43	9.96
VIT_18s0001g09310.t01	Wine grape	nucleus	57.23	9.83
TraesCS6B01G281300.1	Wheat	nucleus	49.06	9.81
TraesCS6A01G242900.1	Wheat	nucleus	48.43	9.67
HORVU6Hr1G062340.1	Barley	nucleus	47.8	9.6
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	49.06	9.31
Solyc04g078050.2.1	Tomato	nucleus	53.46	9.1
KRH52077	Soybean	nucleus	52.83	9.0
KRH15434	Soybean	nucleus	52.83	8.98
KRH61389	Soybean	nucleus	50.94	8.85
CDY03944	Canola	nucleus	45.28	8.47
KRH05606	Soybean	mitochondrion	50.31	8.2
OQU92338	Sorghum	nucleus	44.03	7.77
TraesCS4A01G163100.1	Wheat	nucleus	39.62	7.53
Os03t0441000-01	Rice	nucleus	38.36	7.45
TraesCS4D01G160000.1	Wheat	nucleus	39.62	7.45
TraesCS4B01G150300.3	Wheat	nucleus	39.62	7.42
Zm00001d029598_P003	Maize	nucleus	42.14	7.22
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	38.99	7.13
CDX71498	Canola	cytosol	1.26	1.89
PGSC0003DMT400055395	Potato	nucleus	0.0	0.0
CDY68956	Canola	nucleus	0.0	0.0
CDY58727	Canola	peroxisome	0.0	0.0
CDX71497	Canola	plastid	0.0	0.0
Zm00001d039731_P002	Maize	nucleus	0.0	0.0

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078C5Q8	EnsemblPlants:CDX71499	ProteinID:CDX71499	ProteinID:CDX71499.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00148409001
PFAM:PF05236	PANTHER:PTHR15138	PANTHER:PTHR15138:SF16	InterPro:TAF4	UniParc:UPI0004EE2FFA	SEG:seg

Description

BnaC04g17340D

Coordinates

chrLK031793:+:1730721..1731500

Molecular Weight (calculated)

17611.7 Da

IEP (calculated)

10.050

GRAVY (calculated)

-1.236

Length

159 amino acids

Sequence
(BLAST)

001: MNQKMKEEWE KKQDEAEKLK KPSESEEGDG GVEKEVNRSK GLKGNKEDDD KMRATAANVA ARAVVGGDDR FLKWQLMAEA HHKSVSETGK DGNQKTTSCR
101: GRNSKERQDG GRRFSGPGGQ RLGKNQGPSL QPEVVRTISV KDVVAVLERE PQMSKSTLM

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.