Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G150300.3 | Wheat | nucleus | 88.26 | 90.34 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 87.57 | 89.95 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 86.19 | 89.49 |
| Os03t0441000-01 | Rice | nucleus | 65.71 | 69.72 |
| OQU92338 | Sorghum | nucleus | 67.78 | 65.37 |
| Zm00001d029598_P003 | Maize | nucleus | 65.13 | 60.99 |
| CDX71498 | Canola | cytosol | 7.25 | 59.43 |
| CDX71499 | Canola | nucleus | 7.13 | 38.99 |
| CDY46486 | Canola | nucleus, plastid | 3.8 | 37.5 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 37.86 | 37.47 |
| Bra033662.1-P | Field mustard | nucleus | 33.14 | 37.35 |
| CDY22365 | Canola | nucleus | 33.03 | 37.08 |
| Bra035961.1-P | Field mustard | nucleus | 32.57 | 36.33 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 38.32 | 35.96 |
| CDY25235 | Canola | nucleus | 32.57 | 35.96 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 32.68 | 35.86 |
| CDY58727 | Canola | peroxisome | 4.03 | 35.35 |
| CDY30789 | Canola | mitochondrion | 33.03 | 35.26 |
| Solyc04g078050.2.1 | Tomato | nucleus | 37.86 | 35.22 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 33.26 | 34.36 |
| AT5G43130.2 | Thale cress | nucleus | 33.03 | 33.69 |
| KRH61389 | Soybean | nucleus | 35.1 | 33.33 |
| CDY68956 | Canola | nucleus | 20.48 | 32.36 |
| KRH15434 | Soybean | nucleus | 34.64 | 32.19 |
| KRH52077 | Soybean | nucleus | 34.06 | 31.73 |
| KRH05606 | Soybean | mitochondrion | 34.64 | 30.84 |
| AT1G27720.1 | Thale cress | nucleus | 24.63 | 29.72 |
| CDY60273 | Canola | nucleus | 24.17 | 29.25 |
| CDY03944 | Canola | nucleus | 24.97 | 25.53 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 23.25 | 25.16 |
| PGSC0003DMT400055395 | Potato | nucleus | 14.61 | 21.67 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G034590.13 | EnsemblPlantsGene:HORVU4Hr1G034590 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:RST | InterPro:TAF4 | ncoils:Coil | PANTHER:PTHR15138 |
| PANTHER:PTHR15138:SF16 | PFAM:PF05236 | PFAM:PF12174 | SEG:seg | MapMan:15.3.5.3.4 | : |
Description
No Description!
Coordinates
chrchr4H:-:251013594..251078851
Molecular Weight (calculated)
95017.6 Da
IEP (calculated)
9.874
GRAVY (calculated)
-0.847
Length
869 amino acids
Sequence
(BLAST)
(BLAST)
001: GTAARRGGDE RDSDAHQSEP LAMDPIMKLL EDDEEDESMH SGADVEAFTA ALNREVEGSA SSSSAAGGSS FQPLDRAAGT LPQKSNPVVN NSHGQWQGSV
101: KNDIGNQESQ QHEEKHLYCK KEKSSGPEAI PIDADNKQLH SNTQIECLQL KVKQEPGNNA QQSTVGQQQP MQQIKSQQPP GTNQSNSPAM VGKPPVVTFH
201: MLIPILRRYL DKDRDIQVQS IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNPLANP SNYSISSQVP DQQNEGPRLP QFRPSSSGQL
301: QSNMGYAASE GNLQKPNETG NMSDRKGLQM LQSRPPNIHS IPMQATQDHV QRPHTFLPAL GANSIHSRQF PHSVGGPIAP LRPQMTDSSQ RGQSVQGGVA
401: SVLSSVATGP ALQNNQTSQQ QPNKEQKTNS FTPTVHMNKE TANQPSESAQ SSFAALNAKQ VNPGLVSSKV GGVLENQSSM LATPKPLTTT SSSQPHPSYG
501: TPSELNMQIQ PSTQAPPSGA ASKTPQKKPS AGQKKPLEAI GSSPLPSGKK QKGSGGFHDQ SIDQLNDVTA VSGVNLREEE EQLFSAPKEE SRVSEAARKV
601: VQLEEERLIL QKGPLTKKLA EIMRKYNLKS IGCDVERCLS MCVEERLRGF ISNTIRLSKQ RVDVEKSRHH YYPLSSDVRS HILRVNREAR EQWDRKLVVD
701: ANRIRKQSDG DDNSVISSEK DKAESRGTSK HAKTYKEEDD KMRTTAANAA VRVAAGGDDM LSKWQLLAEK NKLRGEGGDS YSDSLPGTMS PHKLSPKAGK
801: GSREQHEIEK RGYFSILGPG GVRRSAHMKV VRSITVKDVV AALEREHQMS KSSLLFRLHG RQPTEPAAK
101: KNDIGNQESQ QHEEKHLYCK KEKSSGPEAI PIDADNKQLH SNTQIECLQL KVKQEPGNNA QQSTVGQQQP MQQIKSQQPP GTNQSNSPAM VGKPPVVTFH
201: MLIPILRRYL DKDRDIQVQS IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNPLANP SNYSISSQVP DQQNEGPRLP QFRPSSSGQL
301: QSNMGYAASE GNLQKPNETG NMSDRKGLQM LQSRPPNIHS IPMQATQDHV QRPHTFLPAL GANSIHSRQF PHSVGGPIAP LRPQMTDSSQ RGQSVQGGVA
401: SVLSSVATGP ALQNNQTSQQ QPNKEQKTNS FTPTVHMNKE TANQPSESAQ SSFAALNAKQ VNPGLVSSKV GGVLENQSSM LATPKPLTTT SSSQPHPSYG
501: TPSELNMQIQ PSTQAPPSGA ASKTPQKKPS AGQKKPLEAI GSSPLPSGKK QKGSGGFHDQ SIDQLNDVTA VSGVNLREEE EQLFSAPKEE SRVSEAARKV
601: VQLEEERLIL QKGPLTKKLA EIMRKYNLKS IGCDVERCLS MCVEERLRGF ISNTIRLSKQ RVDVEKSRHH YYPLSSDVRS HILRVNREAR EQWDRKLVVD
701: ANRIRKQSDG DDNSVISSEK DKAESRGTSK HAKTYKEEDD KMRTTAANAA VRVAAGGDDM LSKWQLLAEK NKLRGEGGDS YSDSLPGTMS PHKLSPKAGK
801: GSREQHEIEK RGYFSILGPG GVRRSAHMKV VRSITVKDVV AALEREHQMS KSSLLFRLHG RQPTEPAAK
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.