Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22365 | Canola | nucleus | 96.63 | 96.25 |
| Bra035961.1-P | Field mustard | nucleus | 77.3 | 76.51 |
| AT5G43130.2 | Thale cress | nucleus | 79.64 | 72.07 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 4.28 | 48.53 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 50.06 | 41.68 |
| KRH61389 | Soybean | nucleus | 45.91 | 38.69 |
| Solyc04g078050.2.1 | Tomato | nucleus | 45.78 | 37.79 |
| KRH52077 | Soybean | nucleus | 45.53 | 37.62 |
| KRH15434 | Soybean | nucleus | 45.53 | 37.54 |
| KRH05606 | Soybean | mitochondrion | 44.75 | 35.35 |
| Os03t0441000-01 | Rice | nucleus | 37.35 | 35.16 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 37.87 | 34.89 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 36.32 | 34.87 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 37.87 | 34.52 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 37.87 | 34.39 |
| KXG31790 | Sorghum | nucleus | 32.43 | 33.88 |
| Os02t0654400-01 | Rice | nucleus | 31.91 | 33.79 |
| OQU92338 | Sorghum | nucleus | 39.04 | 33.41 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 37.35 | 33.14 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 32.43 | 31.45 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 32.3 | 31.44 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 32.43 | 31.41 |
| Zm00001d039729_P004 | Maize | nucleus | 31.26 | 31.18 |
| Zm00001d029598_P003 | Maize | nucleus | 36.58 | 30.39 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 32.56 | 29.95 |
| PGSC0003DMT400055395 | Potato | nucleus | 18.81 | 24.74 |
| Zm00001d039731_P002 | Maize | nucleus | 15.3 | 22.43 |
Protein Annotations
| MapMan:15.3.5.3.4 | EnsemblPlantsGene:Bra033662 | EnsemblPlants:Bra033662.1 | EnsemblPlants:Bra033662.1-P | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 |
| GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | UniProt:M4EXX3 |
| PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF14 | InterPro:RST | InterPro:TAF4 |
| UniParc:UPI000253F7A7 | SEG:seg | : | : | : | : |
Description
AT5G43130 (E=5e-162) TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor
Coordinates
chrA06:+:25753358..25757833
Molecular Weight (calculated)
85061.1 Da
IEP (calculated)
9.694
GRAVY (calculated)
-0.883
Length
771 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSASL PTVQGNSQSP TEQFTTWTNG IRDSTINLHT QMKEQLQGSR VENQHQRADE SHSQDLLHQA
101: GQRWENPSQV PHPTEKNLTG NQVSESQYSK LQKMSSQQAR GVEQPVNPIN RNPKQVPFAA LLPTLISQLD KDRAMQLRTL YSRLKKNEIP KEGFTRHVKE
201: IVGDQMLRMA VSKLQQVGLN QGKMGIQAPT EINNKKSESD PRGVVLLNQL PPSTGSSVPV QGFTNHPQHN QMQRPPSSFP MYTSSGSFHS FPGPSTNVSG
301: SSLRPHLHDS HMRHVALNQA VGSTGLGAPS QSTTNMMTAP KFERPASVND PSRVQGGATS HFQNSSSLPL NSVPSQGSSL SHVKQESVEQ SFEQNKAAPG
401: TSKEDLEKES CRMVLSAPSN IDANTSMNAR GPLGTSQAGF NARMPPKKPT VGQKKPLETL GSSPPPPSKK QKVVQNSMDQ SIEQLNDVTA VSGVNLREEE
501: EQLFSGGKED SRVSEASRRV VHEEEERLIL QKSPLHKMLA EIMAKVGLKQ ISNDVERCLS LCVEERMRGL LSHIIRLSKQ RVDTEKSRHR TFITSDIRLQ
601: INEMNHKMKE EWEKKQAEAE KLKKSSESEE GDGGVDSEKE KEDNRSKGLK GNKEDDDKMR ATAANVAARA AVGGDDTFLK WQLMAEARQK SVSETGKDGN
701: QKTTSGGGRN SKERQDGGRR FSGPGGRRLG KNQGPSLQPK VVRTISVKDV VAVLEREPQM SKSTLMYRLI Q
101: GQRWENPSQV PHPTEKNLTG NQVSESQYSK LQKMSSQQAR GVEQPVNPIN RNPKQVPFAA LLPTLISQLD KDRAMQLRTL YSRLKKNEIP KEGFTRHVKE
201: IVGDQMLRMA VSKLQQVGLN QGKMGIQAPT EINNKKSESD PRGVVLLNQL PPSTGSSVPV QGFTNHPQHN QMQRPPSSFP MYTSSGSFHS FPGPSTNVSG
301: SSLRPHLHDS HMRHVALNQA VGSTGLGAPS QSTTNMMTAP KFERPASVND PSRVQGGATS HFQNSSSLPL NSVPSQGSSL SHVKQESVEQ SFEQNKAAPG
401: TSKEDLEKES CRMVLSAPSN IDANTSMNAR GPLGTSQAGF NARMPPKKPT VGQKKPLETL GSSPPPPSKK QKVVQNSMDQ SIEQLNDVTA VSGVNLREEE
501: EQLFSGGKED SRVSEASRRV VHEEEERLIL QKSPLHKMLA EIMAKVGLKQ ISNDVERCLS LCVEERMRGL LSHIIRLSKQ RVDTEKSRHR TFITSDIRLQ
601: INEMNHKMKE EWEKKQAEAE KLKKSSESEE GDGGVDSEKE KEDNRSKGLK GNKEDDDKMR ATAANVAARA AVGGDDTFLK WQLMAEARQK SVSETGKDGN
701: QKTTSGGGRN SKERQDGGRR FSGPGGRRLG KNQGPSLQPK VVRTISVKDV VAVLEREPQM SKSTLMYRLI Q
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.