Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G242900.1 | Wheat | nucleus | 96.86 | 96.73 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 91.07 | 91.41 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 96.35 | 91.41 |
| Os02t0654400-01 | Rice | nucleus | 63.02 | 68.82 |
| KXG31790 | Sorghum | nucleus | 58.36 | 62.87 |
| Zm00001d039729_P004 | Maize | nucleus | 59.75 | 61.45 |
| Zm00001d039731_P002 | Maize | nucleus | 36.48 | 55.13 |
| CDX71498 | Canola | cytosol | 6.67 | 50.0 |
| CDX71499 | Canola | nucleus | 9.81 | 49.06 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 39.5 | 35.76 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 37.61 | 35.55 |
| CDY46486 | Canola | nucleus, plastid | 3.77 | 34.09 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 35.6 | 33.33 |
| CDY22365 | Canola | nucleus | 31.57 | 32.43 |
| Bra033662.1-P | Field mustard | nucleus | 31.45 | 32.43 |
| CDY25235 | Canola | nucleus | 31.57 | 31.89 |
| Bra035961.1-P | Field mustard | nucleus | 31.2 | 31.84 |
| CDY30789 | Canola | mitochondrion | 30.44 | 29.73 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 34.47 | 29.59 |
| AT5G43130.2 | Thale cress | nucleus | 31.57 | 29.46 |
| KRH61389 | Soybean | nucleus | 32.96 | 28.63 |
| Solyc04g078050.2.1 | Tomato | nucleus | 33.21 | 28.27 |
| KRH52077 | Soybean | nucleus | 32.96 | 28.08 |
| KRH15434 | Soybean | nucleus | 32.33 | 27.49 |
| AT1G27720.1 | Thale cress | nucleus | 24.15 | 26.67 |
| KRH05606 | Soybean | mitochondrion | 32.33 | 26.33 |
| CDY60273 | Canola | nucleus | 23.27 | 25.77 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 23.9 | 23.66 |
| CDY68956 | Canola | nucleus | 16.35 | 23.64 |
| CDY03944 | Canola | nucleus | 23.52 | 22.0 |
| PGSC0003DMT400055395 | Potato | nucleus | 11.2 | 15.19 |
| CDY58727 | Canola | peroxisome | 1.26 | 10.1 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G281300.1 | EnsemblPlantsGene:TraesCS6B01G281300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:RST | InterPro:TAF4 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 |
| PFAM:PF05236 | PFAM:PF12174 | SEG:seg | TIGR:cd08045 | MapMan:15.3.5.3.4 | : |
Description
No Description!
Coordinates
chr6B:+:507576489..507592114
Molecular Weight (calculated)
86816.5 Da
IEP (calculated)
10.084
GRAVY (calculated)
-0.991
Length
795 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPPPEAVG DAGAPSSSGT LPQDISDVSK STVGQLQAAD QKASAQSSQQ AGQPHMNPSY QLSQPKLETG VSENENFSQQ EEHHYQPEQE QPRCENQLQQ
101: AETNSFQLAE KGTDYVGQQS LTGSMEDVAQ PSGDQQHVNP VVGQQAPHGA QETRKRGYQP SIPFNMLIPI LQAHLDRDKD MQLQSVWAKL RRNEVHKDDF
201: LRVIRNIVGD QMLKQAAHKV FAQMQAQAQR NNNQGNANQH SSSSQASTAA SGSAKLPDQL VRMPTPPNQG HNSQTSSSAQ NFVPLSGTQM QNSMHYFAHD
301: SSIQKPDVKG VHALPNRPPG MSLPIPLQTS NKQLQPTEIQ QASQQLYGPT GTPQSYPRPT SGSMPLRPQS QAPETRPPFH PHGRIPAKIG TVPTHPTMQQ
401: NASARQMQQN KDIKNNAYNP SANTKQGSEP AGKARQVGPG GPSAKLQGKQ AAPKTSTPPA ARTKKLGGQK KSLETAGSAP PPTSKRQKTA GAFQEQSIDQ
501: LNDVTAVSGV NLREEEEQLL SAPKEESPAT EAARRIVQEE EENLFLQRGP LLKKLAEIVL KSNLKNAGAD VGRCLSMCVE ERLRRFISTL IRVSKQRTDA
601: EKTGHRLVIT SDVGRQILQM NQKAKEEWDK KQAETDKNKK QTEDGGSGGA ELEKEKEESR PKNAKPNKEE DDKMRTTAAN VAARQAVGGS DMFSKWQLMA
701: EQAKQKRAPA PRPSHVSGKG SAERSEASKR SHLAAFGTGG TERQGKGSFA NRHSHGPQRT VSVKDVISVL EREPQMTKSR LIYRLYERLP GESTD
101: AETNSFQLAE KGTDYVGQQS LTGSMEDVAQ PSGDQQHVNP VVGQQAPHGA QETRKRGYQP SIPFNMLIPI LQAHLDRDKD MQLQSVWAKL RRNEVHKDDF
201: LRVIRNIVGD QMLKQAAHKV FAQMQAQAQR NNNQGNANQH SSSSQASTAA SGSAKLPDQL VRMPTPPNQG HNSQTSSSAQ NFVPLSGTQM QNSMHYFAHD
301: SSIQKPDVKG VHALPNRPPG MSLPIPLQTS NKQLQPTEIQ QASQQLYGPT GTPQSYPRPT SGSMPLRPQS QAPETRPPFH PHGRIPAKIG TVPTHPTMQQ
401: NASARQMQQN KDIKNNAYNP SANTKQGSEP AGKARQVGPG GPSAKLQGKQ AAPKTSTPPA ARTKKLGGQK KSLETAGSAP PPTSKRQKTA GAFQEQSIDQ
501: LNDVTAVSGV NLREEEEQLL SAPKEESPAT EAARRIVQEE EENLFLQRGP LLKKLAEIVL KSNLKNAGAD VGRCLSMCVE ERLRRFISTL IRVSKQRTDA
601: EKTGHRLVIT SDVGRQILQM NQKAKEEWDK KQAETDKNKK QTEDGGSGGA ELEKEKEESR PKNAKPNKEE DDKMRTTAAN VAARQAVGGS DMFSKWQLMA
701: EQAKQKRAPA PRPSHVSGKG SAERSEASKR SHLAAFGTGG TERQGKGSFA NRHSHGPQRT VSVKDVISVL EREPQMTKSR LIYRLYERLP GESTD
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.