CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX81826
CDX87098
CDY00904
CDY03594
CDY05378
CDY05473
CDY19814
CDY21749
CDY22214
CDY22787
CDY26245
CDY41320
CDY42510
CDY48302
CDY60164
CDY67548
CDY69783

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	CDX81826	AT1G17440.1	17340043
AT1G27720.1	CDY21749	AT1G17440.1	17340043
AT1G27720.1	CDY26245	AT1G17440.1	17340043
AT1G27720.1	CDY48302	AT1G17440.1	17340043
AT1G27720.1	CDY03594	AT1G50300.1	17340043
AT1G27720.1	CDY22787	AT1G50300.1	17340043
AT1G27720.1	CDY42510	AT1G50300.1	17340043
AT1G27720.1	CDY67548	AT1G50300.1	17340043
AT1G27720.1	CDY00904	AT3G10070.1	17340043
AT1G27720.1	CDY22214	AT3G10070.1	17340043
AT1G27720.1	CDY41320	AT3G10070.1	17340043
AT1G27720.1	CDY60164	AT3G10070.1	17340043
AT1G27720.1	CDX75423	AT4G34340.1	17340043
AT1G27720.1	CDY69783	AT4G34340.1	17340043
AT1G27720.1	CDX87098	AT5G25150.1	17340043
AT1G27720.1	CDY05378	AT5G25150.1	17340043
AT1G27720.1	CDY05473	AT5G25150.1	17340043
AT1G27720.1	CDY19814	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030061.1-P	Field mustard	mitochondrion, nucleus	90.81	81.2
CDY03944	Canola	nucleus	80.5	68.0
CDX71498	Canola	cytosol	7.66	51.89
CDX71499	Canola	nucleus	10.03	45.28
AT1G27720.1	Thale cress	nucleus	45.13	45.0
CDY46486	Canola	nucleus, plastid	5.43	44.32
GSMUA_Achr4P14200_001	Banana	cytosol	3.76	39.71
CDY22365	Canola	nucleus	40.25	37.34
CDY25235	Canola	nucleus	38.72	35.32
CDY30789	Canola	mitochondrion	39.97	35.26
CDX71497	Canola	plastid	4.46	31.37
CDY58727	Canola	peroxisome	4.18	30.3
CDY68956	Canola	nucleus	22.84	29.82
TraesCS4A01G163100.1	Wheat	nucleus	29.8	25.57
Os03t0441000-01	Rice	nucleus	28.97	25.4
TraesCS4B01G150300.3	Wheat	nucleus	29.8	25.21
TraesCS4D01G160000.1	Wheat	nucleus	29.25	24.82
KXG31790	Sorghum	nucleus	25.49	24.8
Os02t0654400-01	Rice	nucleus	25.07	24.73
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	29.25	24.17
Zm00001d039729_P004	Maize	nucleus	25.91	24.06
TraesCS6A01G242900.1	Wheat	nucleus	25.91	23.37
HORVU6Hr1G062340.1	Barley	nucleus	25.77	23.36
TraesCS6B01G281300.1	Wheat	nucleus	25.77	23.27
OQU92338	Sorghum	nucleus	29.11	23.2
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	26.32	22.55
Zm00001d029598_P003	Maize	nucleus	27.99	21.66
Zm00001d039731_P002	Maize	nucleus	13.09	17.87

Protein Annotations

MapMan:15.3.5.3.4	GO:A0A078J6T1	UniProt:A0A078J6T1	EnsemblPlants:CDY60273	ProteinID:CDY60273	ProteinID:CDY60273.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00028407001	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14
InterPro:RST	InterPro:TAF4	UniParc:UPI0004EDD985	SEG:seg	:	:

Description

BnaA07g36550DBnaA07g36550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6T1]

Coordinates

chrLK033862:+:16992..21750

Molecular Weight (calculated)

80190.4 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.855

Length

718 amino acids

Sequence
(BLAST)

001: MDPSLLKLLE EDDEDESMHS KEDVDAFQAS LIREIEGGNH SWSQQFAAWN NGITQDANTN KLHILESTQM KEQQQQSVLG SHDRELKPED ESPVQHNHNL
101: PQNHLQPDGL SENPSHVPQA TDLQSRNNSI SMEQPVGSVN LGPTQLQVGE LFRLLRPQVD KDRGKQLNTL FYKFKSNEVT KESFLRQARN ILGERMILWA
201: VRKLQQQGNK GVKVPDGPNH YRDPFTSAED QSLIQSLTED ISAKKSDTYG SHDNQLHSTS SGTLSSSATV HGLHNSESPV SVNGPAMVHG GPIFPNQNNS
301: SLPINPAPCR GSVTKDQTMS NDQTVAHVKQ KLTDQSFDQV RKPCPVVRQD VSNVPMEQRN GNPRRSDDDL LKQSTEMVLS APTTHANFAS PSVKTQLDSS
401: TMVNFSAPAA TIFPGTIVTT TQGQKKTLEA QGSSLPPLSK RQKLCETSLA GSGKKFNDVT ELSGINLMEE ERELLSSLTK NNSRVFKSFR RVAYEEEGRT
501: ILQKAPLQRK LAGIMAKSGI KHIKDDVERC LSLCVEERMR VLLSKIIRTS KQRTDPEKCR NRICITSDIR KQINEMNQKE KDEQERKHGG EEELKNDTAK
601: EDKRSEQLKA NKEQAEKRAK AANDAALASV GGDNVFSKWK LMAEARQKPS SETRRNAKKL SGGQRLGKKN HGSPKVVRSI SVKDVIAVVE KEHQMSRSTL
701: LYRLYDSICS YVPTQDKT

Best Arabidopsis Sequence Match ( AT1G27720.1 )
(BLAST)

001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEGSNL KSINNTTGNE SEKPQPRYMK LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP
101: GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ
201: GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK
301: NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD
401: SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV
501: HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK
601: NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE
701: PQMSRSTLLY RVYNRICSDV

Arabidopsis Description

TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.