CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22365	Canola	nucleus	77.36	10.59
CDY25235	Canola	nucleus	72.64	9.78
CDY30789	Canola	mitochondrion	72.64	9.46
CDY60273	Canola	nucleus	51.89	7.66
TraesCS4A01G163100.1	Wheat	nucleus	59.43	7.53
CDY68956	Canola	nucleus	38.68	7.45
Os03t0441000-01	Rice	nucleus	57.55	7.45
TraesCS4D01G160000.1	Wheat	nucleus	59.43	7.45
TraesCS4B01G150300.3	Wheat	nucleus	59.43	7.42
Solyc04g078050.2.1	Tomato	nucleus	65.09	7.39
VIT_18s0001g09310.t01	Wine grape	nucleus	64.15	7.34
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	59.43	7.25
KXG31790	Sorghum	nucleus	50.0	7.18
CDY03944	Canola	nucleus	55.66	6.94
Os02t0654400-01	Rice	nucleus	47.17	6.87
CDX71497	Canola	plastid	6.6	6.86
KRH15434	Soybean	nucleus	60.38	6.84
HORVU6Hr1G062340.1	Barley	nucleus	50.94	6.82
TraesCS6A01G242900.1	Wheat	nucleus	50.94	6.78
KRH61389	Soybean	nucleus	58.49	6.78
KRH52077	Soybean	nucleus	59.43	6.75
Zm00001d039729_P004	Maize	nucleus	49.06	6.73
TraesCS6B01G281300.1	Wheat	nucleus	50.0	6.67
OQU92338	Sorghum	nucleus	55.66	6.55
KRH05606	Soybean	mitochondrion	59.43	6.45
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	50.94	6.44
Zm00001d029598_P003	Maize	nucleus	53.77	6.14
Zm00001d039731_P002	Maize	nucleus	23.58	4.75
CDY46486	Canola	nucleus, plastid	3.77	4.55
CDY58727	Canola	peroxisome	3.77	4.04
PGSC0003DMT400055395	Potato	nucleus	8.49	1.54
CDX71499	Canola	nucleus	1.89	1.26

Protein Annotations

EnsemblPlants:CDX71498	EnsemblPlantsGene:GSBRNA2T00148408001	GO:A0A078C905	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:TAF4	PANTHER:PTHR15138	PANTHER:PTHR15138:SF16
PFAM:PF05236	ProteinID:CDX71498	ProteinID:CDX71498.1	UniParc:UPI0004EF2E66	MapMan:15.3.5.3.4	:

Description

BnaC04g17330D

Coordinates

chrLK031793:+:1726233..1730631

Molecular Weight (calculated)

12525.2 Da

IEP (calculated)

5.251

GRAVY (calculated)

-0.293

Length

106 amino acids

Sequence
(BLAST)

001: MNEIYYVPEE EEQLFSRGKE DSCVSEASRR VVHEEEERFI LQKSPLHKML AEIMVKVELK QISNDVERCL SLCVEERMRG LLTHIIRLSK QVSLTSFYYL
101: LGNNLF

Best Arabidopsis Sequence Match ( AT5G43130.3 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGESI LFNLFPLAKP MNKPINPP

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.