Factsheet for HORVU6Hr1G062340.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU3Hr1G084430.4
HORVU3Hr1G085840.7
HORVU5Hr1G054500.18
HORVU6Hr1G032840.2
HORVU7Hr1G006990.9
HORVU7Hr1G113760.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT1G27720.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT1G27720.1	HORVU5Hr1G054500.18	AT1G50300.1	17340043
AT1G27720.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043
AT1G27720.1	HORVU7Hr1G006990.9	AT4G34340.1	17340043
AT1G27720.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT1G27720.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G242900.1	Wheat	nucleus	91.92	91.46
TraesCS6B01G281300.1	Wheat	nucleus	91.41	91.07
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	91.29	86.28
Os02t0654400-01	Rice	nucleus	62.88	68.41
KXG31790	Sorghum	nucleus	58.21	62.47
Zm00001d039729_P004	Maize	nucleus	59.97	61.45
Zm00001d039731_P002	Maize	nucleus	36.62	55.13
CDX71498	Canola	cytosol	6.82	50.94
CDX71499	Canola	nucleus	9.6	47.8
GSMUA_Achr4P03380_001	Banana	nucleus	39.9	35.99
GSMUA_Achr4P14210_001	Banana	nucleus	37.88	35.67
CDY46486	Canola	nucleus, plastid	3.66	32.95
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	35.86	32.68
Bra033662.1-P	Field mustard	nucleus	31.44	32.3
CDY22365	Canola	nucleus	31.31	32.04
CDY25235	Canola	nucleus	31.31	31.51
Bra035961.1-P	Field mustard	nucleus	30.81	31.32
VIT_18s0001g09310.t01	Wine grape	nucleus	34.85	29.81
AT5G43130.2	Thale cress	nucleus	31.82	29.58
CDY30789	Canola	mitochondrion	30.3	29.48
KRH61389	Soybean	nucleus	33.46	28.96
KRH52077	Soybean	nucleus	33.33	28.3
Solyc04g078050.2.1	Tomato	nucleus	33.21	28.16
KRH15434	Soybean	nucleus	32.7	27.7
KRH05606	Soybean	mitochondrion	32.58	26.43
AT1G27720.1	Thale cress	nucleus	23.86	26.25
CDY60273	Canola	nucleus	23.36	25.77
Bra030061.1-P	Field mustard	mitochondrion, nucleus	24.12	23.79
CDY68956	Canola	nucleus	16.04	23.09
CDY03944	Canola	nucleus	23.48	21.88
PGSC0003DMT400055395	Potato	nucleus	10.98	14.85
CDY58727	Canola	peroxisome	1.39	11.11

Protein Annotations

MapMan:15.3.5.3.4	EMBL:AK363025	UniProt:F2DGK8	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G062340	EnsemblPlants:HORVU6Hr1G062340.1	PFAM:PF05236
PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF16	InterPro:RST	InterPro:TAF4	UniParc:UPI0002006359
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DGK8]

Coordinates

chrchr6H:-:417601812..417617533

Molecular Weight (calculated)

86778.6 Da

IEP (calculated)

10.184

GRAVY (calculated)

-1.010

Length

792 amino acids

Sequence
(BLAST)

001: MSSRPPEAVG DAGAPSSSGT LPQDISDVSK STAGQLQAAD QKGSAQSSQQ AGLPRMNPSD QLSQPKSETG DSENENFIKQ EEHFYQPEQE QSRSENQLQQ
101: AETNSFQLAE KGTDYVAQQS LTGSMEDAAQ PSGDQRHVNP VVGQQAPHGA QETRKRGYQP SIPFNMLIPI LQAHLDRDKD MQLQSVWAKL RRNEVHKDDF
201: LRVIRNIVGD QMLKQAAHKV FAQMQAQAQR NNQGNANQHS LPSQASSTPA KLPDQQVRMP TPPNQGHKSQ ASSSPQSFVP LSGTQMQSSM HYFAHDNSIQ
301: KPDVKGVNAL PNRPPGMSLP IQLQTSNKQL QPTEIQQASQ QLYGTTNTPQ SYPRPTSGSM PLRPQSQAPE TRPPFHPHGR IPAKVGTVPT HPSMQQNPLA
401: RQMQQNKDIK NNAHNPSANT KQGSEPAGKA RQVGTGPSAK LQGKQAAPKT STPPAARTTK KSGGQKKSLE TAGSAPPPSS KRQKTAGAFQ EQSIDQLNDV
501: TAVSGVNLRE EEEQLLSAPK EESPATEAAR RIVQEEEENL FLQKGPLVKK LAEIVLKCNL KNAGADVGRC LSMCVEERLR RFISTLIRVS KQRVDAEKTG
601: HRLVITSDVG RQILQMNQKA KEEWDKKQAE TDKNKKQTED GSSGGAELEK EKEESRPKNA KPNKEEDDKM RTTAANVAAR QAVGGSDMFS KWQLMAEQAK
701: QKRAPAPRPS HVSGKGSAER SEASKRSHLA AFGTGGTERQ GKGSFANRHS HGPQRTVSVK DVICVLEREH QMTKSRLIYR LYERLPGEPT TD

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.