CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99320
EES03919
EES15849
EES17247
KXG20501
KXG33694

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	KXG33694	AT1G17440.1	17340043
AT1G27720.1	EER99320	AT1G50300.1	17340043
AT1G27720.1	EES03919	AT3G10070.1	17340043
AT1G27720.1	EES15849	AT4G34340.1	17340043
AT1G27720.1	EES17247	AT4G34340.1	17340043
AT1G27720.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039729_P004	Maize	nucleus	88.62	84.61
Zm00001d039731_P002	Maize	nucleus	56.5	79.28
Os02t0654400-01	Rice	nucleus	62.6	63.46
TraesCS6A01G242900.1	Wheat	nucleus	63.28	58.67
TraesCS6B01G281300.1	Wheat	nucleus	62.87	58.36
HORVU6Hr1G062340.1	Barley	nucleus	62.47	58.21
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	63.41	55.85
CDX71498	Canola	cytosol	7.18	50.0
CDX71499	Canola	nucleus	10.43	48.43
GSMUA_Achr4P03380_001	Banana	nucleus	43.22	36.33
GSMUA_Achr4P14210_001	Banana	nucleus	40.65	35.67
CDY46486	Canola	nucleus, plastid	4.2	35.23
Bra035961.1-P	Field mustard	nucleus	34.55	32.73
Bra033662.1-P	Field mustard	nucleus	33.88	32.43
CDY22365	Canola	nucleus	33.88	32.3
CDY25235	Canola	nucleus	33.88	31.77
OQU92338	Sorghum	nucleus	37.13	30.41
CDY30789	Canola	mitochondrion	33.47	30.34
KRH61389	Soybean	nucleus	36.59	29.51
AT5G43130.2	Thale cress	nucleus	34.01	29.46
VIT_18s0001g09310.t01	Wine grape	nucleus	36.72	29.27
KRH52077	Soybean	nucleus	36.31	28.72
KRH15434	Soybean	nucleus	36.18	28.56
Solyc04g078050.2.1	Tomato	nucleus	36.04	28.48
AT1G27720.1	Thale cress	nucleus	26.42	27.08
KRH05606	Soybean	mitochondrion	35.64	26.95
CDY60273	Canola	nucleus	24.8	25.49
CDY68956	Canola	nucleus	17.89	24.0
Bra030061.1-P	Field mustard	mitochondrion, nucleus	25.47	23.41
CDY03944	Canola	nucleus	24.8	21.53
CDY58727	Canola	peroxisome	1.76	13.13
PGSC0003DMT400055395	Potato	nucleus	10.3	12.97

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.4	UniProt:A0A1B6Q1M8	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KXG31790	ProteinID:KXG31790
ProteinID:KXG31790.1	ProteinID:OQU86247.1	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF16
InterPro:RST	EnsemblPlantsGene:SORBI_3003G056100	InterPro:TAF4	UniParc:UPI00081ADA33	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:5013598..5023484

Molecular Weight (calculated)

80960.1 Da

IEP (calculated)

9.995

GRAVY (calculated)

-0.934

Length

738 amino acids

Sequence
(BLAST)

001: MSKAPDDQLQ ATEQEESVHP SQQAGQQHVN TPDQISKTEL TEGSKNEQPV QVEQQNSNLQ QAHSEIQLQQ AETNSFQLAE KETGYFGQQS FAGAKVDVAQ
101: PSVVQQNVKQ TVGQQASSGA QDTRKGPSIP FNLLIPILQA HLDRDKDMQL QAVWAKLRRN EVHKDDFLRV IRNIVGDQML KQAAHKVFVQ MQAQAQRNSQ
201: ANPSQQSLFS QVSSQQMPSS GSTQTQNSVH YLAHDNTNQN PDAKGTNAVP NQPPRMNTAV PLQAKNKQHQ PTQLQQASQQ IYGASNPGAQ AYPRSITGSL
301: RSPSPVPETQ PSMHAPGMAP AKIVPPPTHP MMQHNAVAWQ MHQNKELKTN APPPNAIVKQ NSESVGKARM AGTGNSSAKG KQGTPNSTPN ASGGAKSKKS
401: GGQKKSLEAA GSTQPSSKKQ KTSGAFQEQS IDQLNDVTAV SGVNIREEEE QLLSAPKEES LASQEARRIA QEEEENLFLR KGPLLKKLAE IARKCDLKNI
501: SGDVEHCLSM CVEERLRRLI STLIRVSKQR IDTEKTGHRL VITSDVGRQI LQMNQKAKEE WDKKQAEEAD KNKKQTEADG SGATDLEKEK EESRPKNVKP
601: NKEEDDKMRT NAANVAARQA VGGSDMLSKW QLMAEQARQK REGLDVSAAS QPGRGPGSRP FLKFGNGPGE HQEGSKRSHS VAFGTGGMKR PGRTPFAGPQ
701: RLISVKDVIC ALEREPQMTK SRLIYRLHER FPVDSTVD

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.