CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90111
EER99320
EES00711
EES01269
EES03919
EES15849
EES17247
KXG20501
KXG31790
KXG33694
OQU92338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	EES00711	AT1G02680.1	17340043
AT1G17440.1	KXG33694	AT1G17440.1	17340043
AT1G17440.1	KXG31790	AT1G27720.1	17340043
AT1G17440.1	OQU92338	AT1G27720.1	17340043
AT1G17440.1	EER90111	AT1G32750.1	17340043
AT1G17440.1	EER99320	AT1G50300.1	17340043
AT1G17440.1	EES03919	AT3G10070.1	17340043
AT1G17440.1	EES01269	AT4G20280.1	17340043
AT1G17440.1	EES15849	AT4G34340.1	17340043
AT1G17440.1	EES17247	AT4G34340.1	17340043
AT1G17440.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042879_P002	Maize	plastid	81.95	95.78
Zm00001d012396_P003	Maize	nucleus, plastid	86.1	86.57
Os01t0846900-01	Rice	nucleus	73.47	75.09
TraesCS3A01G362900.1	Wheat	nucleus, plastid	68.59	69.72
TraesCS3D01G356600.1	Wheat	nucleus, plastid	67.69	69.19
TraesCS3B01G395300.2	Wheat	nucleus, plastid	66.43	68.27
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	69.49	67.43
HORVU6Hr1G032840.2	Barley	nucleus, plastid	38.99	51.55
TraesCS6D01G151600.1	Wheat	nucleus, plastid	38.81	51.44
TraesCS6B01G190100.1	Wheat	nucleus, plastid	33.75	44.74
TraesCS6A01G161300.1	Wheat	nucleus, plastid	32.31	42.62
PGSC0003DMT400012398	Potato	nucleus	14.44	42.11
Solyc06g062900.2.1	Tomato	nucleus	17.51	40.42
KRH06174	Soybean	nucleus, plastid	22.02	34.96
GSMUA_Achr7P10670_001	Banana	plastid	38.99	33.59
KRH47589	Soybean	nucleus, plastid	33.94	31.39
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	33.21	31.35
CDY48302	Canola	plastid	32.67	30.57
PGSC0003DMT400006601	Potato	nucleus, plastid	35.2	30.52
Solyc03g122020.2.1	Tomato	nucleus, plastid	35.2	30.37
CDX81826	Canola	plastid	28.88	29.74
Bra025975.1-P	Field mustard	plastid	34.3	29.37
CDY26245	Canola	plastid	34.12	29.03
AT1G17440.1	Thale cress	plastid	35.2	28.55
CDY21749	Canola	plastid	28.7	28.39
Bra030989.1-P	Field mustard	plastid	28.52	25.94
EES03919	Sorghum	nucleus, plastid	22.56	25.1

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EntrezGene:8060089	UniProt:C5XPR9	ProteinID:EES03876.1
GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KXG33694	ProteinID:KXG33694	ProteinID:KXG33694.1	PFAM:PD012998
PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	EnsemblPlantsGene:SORBI_3003G355000	SUPFAM:SSF47113	unigene:Sbi.20817
InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0001A858FB	RefSeq:XP_002458756.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:67376639..67381829

Molecular Weight (calculated)

58290.1 Da

IEP (calculated)

10.427

GRAVY (calculated)

-0.553

Length

554 amino acids

Sequence
(BLAST)

001: MADPPPVAAS ASPAQPDQLA ATAASVSTPQ NPNPNPLLSP QIPPSPTVSD LSAHISSPQQ LDQAAAAASG GGGSMDYPPR PPQLQAPSPT QAGAGAAGFG
101: QIPRSGSASR LSTASQLQQY AAARMYGGQM SFSGGGGLVG QQQQQQLAGR APMLGQGQLG MLQGQGNAAS AAHFGLQSQM MAQARQKGMA QGTQLNNANT
201: AQALQGMQPM GVMGTMGMNQ MRPNGTIPYG AQQRFAHAQM RPQASQQPAL SPQKVPGQGL SRTASITALN SQLSGSSQNG QMVAMSVPQQ QQQQWLKQMQ
301: SSMGSPVSPQ QQYQHQQRLL LMQQLQQKTG LSQQQLLQVQ QQHPHLSAQQ LIQQQHFLQQ LQQQQPLQSP RVSASGSQKS ANLTGSQPGT PLSVGTMTGG
401: SASQGAEGTS QLLGKRKIQD LVAQVDPLGK VDPEVEDLLL EIADDFIDSV TAFACTLAKH RKSSVVEAKD VLLHLERNWH LSVPGFSRED KNPQRNSVKP
501: LVDPQQSESD ATGIRGTSNK LGANNSVGNH QIRPPMAEPS AMPTVGPLSK APRF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.