CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH24217
KRH24348
KRH29220
KRH30849
KRH31624
KRH31641
KRH31820
KRH32528
KRH32724
KRH39697
KRH47589
KRH52077
KRH52333
KRH61389
KRH61671
KRH62676
KRH62947
KRH64870
KRH75898

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	KRH31624	AT1G02680.1	17340043
AT1G17440.1	KRH31641	AT1G02680.1	17340043
AT1G17440.1	KRH31820	AT1G02680.1	17340043
AT1G17440.1	KRH06174	AT1G17440.1	17340043
AT1G17440.1	KRH47589	AT1G17440.1	17340043
AT1G17440.1	KRH05606	AT1G27720.1	17340043
AT1G17440.1	KRH15434	AT1G27720.1	17340043
AT1G17440.1	KRH52077	AT1G27720.1	17340043
AT1G17440.1	KRH61389	AT1G27720.1	17340043
AT1G17440.1	KRH39697	AT1G32750.1	17340043
AT1G17440.1	KRH62676	AT1G32750.1	17340043
AT1G17440.1	KRH24217	AT1G50300.1	17340043
AT1G17440.1	KRH29220	AT1G50300.1	17340043
AT1G17440.1	KRH62947	AT1G50300.1	17340043
AT1G17440.1	KRH75898	AT1G50300.1	17340043
AT1G17440.1	KRH30849	AT3G10070.1	17340043
AT1G17440.1	KRH32724	AT3G10070.1	17340043
AT1G17440.1	KRH64870	AT4G20280.1	17340043
AT1G17440.1	KRH19914	AT4G34340.1	17340043
AT1G17440.1	KRH32528	AT4G34340.1	17340043
AT1G17440.1	KRG99418	AT5G25150.1	17340043
AT1G17440.1	KRH05348	AT5G25150.1	17340043
AT1G17440.1	KRH15679	AT5G25150.1	17340043
AT1G17440.1	KRH52333	AT5G25150.1	17340043
AT1G17440.1	KRH61671	AT5G25150.1	17340043
AT1G17440.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06174	Soybean	nucleus, plastid	44.07	75.64
PGSC0003DMT400012398	Potato	nucleus	18.03	56.84
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	54.26	55.37
Solyc06g062900.2.1	Tomato	nucleus	21.87	54.58
PGSC0003DMT400006601	Potato	nucleus, plastid	52.42	49.14
CDY26245	Canola	plastid	50.75	46.7
Solyc03g122020.2.1	Tomato	nucleus, plastid	49.58	46.26
Bra025975.1-P	Field mustard	plastid	47.41	43.89
CDY48302	Canola	plastid	41.74	42.23
AT1G17440.1	Thale cress	plastid	47.41	41.58
CDX81826	Canola	plastid	34.89	38.85
CDY21749	Canola	plastid	36.06	38.57
Bra030989.1-P	Field mustard	plastid	38.23	37.6
GSMUA_Achr7P10670_001	Banana	plastid	40.23	37.48
Zm00001d042879_P002	Maize	plastid	29.55	37.34
TraesCS3B01G395300.2	Wheat	nucleus, plastid	31.39	34.88
TraesCS3D01G356600.1	Wheat	nucleus, plastid	31.55	34.87
TraesCS3A01G362900.1	Wheat	nucleus, plastid	31.72	34.86
Zm00001d012396_P003	Maize	nucleus, plastid	32.05	34.85
KXG33694	Sorghum	nucleus, plastid	31.39	33.94
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	32.05	33.63
Os01t0846900-01	Rice	nucleus	30.05	33.21
TraesCS6D01G151600.1	Wheat	nucleus, plastid	23.04	33.01
HORVU6Hr1G032840.2	Barley	nucleus, plastid	21.37	30.55
KRH30849	Soybean	nucleus, plastid	21.87	25.84
TraesCS6A01G161300.1	Wheat	nucleus, plastid	18.03	25.71
TraesCS6B01G190100.1	Wheat	nucleus, plastid	17.36	24.88
KRH32724	Soybean	nucleus, plastid	20.53	24.26

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100783017	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EMBL:ACUP02004154	EnsemblPlantsGene:GLYMA_07G037600
GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	UniProt:I1KHA5	InterPro:IPR009072	EnsemblPlants:KRH47589	ProteinID:KRH47589	ProteinID:KRH47589.1
PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12
InterPro:TFIID_TAF12_dom	UniParc:UPI000233834E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3099619..3108842

Molecular Weight (calculated)

65221.0 Da

IEP (calculated)

10.627

GRAVY (calculated)

-0.831

Length

599 amino acids

Sequence
(BLAST)

001: MAETASPSSK PSPMDPQIQN PAPSNSNSNP PIPSPSPSHN MASPSLPPLP QDQQQQLQQQ LSPPQQQQQQ QQQQQQPLVS SNSMNNMNPI SNFQLQQSMQ
101: RSPSLSRLNQ IQPQQTTQQQ QQFGVMRQQA GLYGGQMSFA AAGGAGAAQQ QQLGGSNLSR SALMGQSGHF PMLSGAGTQF NLLSSPRQKG GLVQSSQFSS
201: GNSAGQSLQG MQAMGMMGSP NLTSQLRANG AMAYAQQLRM SQGQIRQQLS QQGSLNTAQV QGLPRSSSLA FMSSQLSGLS QNGQPAMINS LTQQQWLKQM
301: PAMSGPAAPL RLQHQRQQQL GSSTQLQQNS MTLNQQQLSQ LMQQQKSMGQ PQLLQQQQQQ QQQPQPQQLQ QQLIQQQPQQ QSHLQVSVHQ QQQQQQQSPR
401: MPGPAGQKSL SLTGSQPDVT ASGATTPGGS SSQGTEATNQ VLGKRKIQDL VAQVDPQGRL DPEVIDLLLE LADDFIDSAT THGCILAKHR KSSTLESKDL
501: LLHLEKNWDL TIPGYSSEEK KNQSKPQLND LHKRRLDMVR TLMESSSSES SINSSKEMSR QGISNPPPVG THHLVRPLSP EQLVSHAAGS QMLQQMTRF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.