CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06174
KRH19914
KRH24348
KRH30849
KRH32528
KRH32724
KRH47589
KRH52586
KRH61926
KRH64870

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	KRH06174	AT1G17440.1	17340043
AT1G02680.1	KRH47589	AT1G17440.1	17340043
AT1G02680.1	KRH52586	AT1G71230.1	21798944
AT1G02680.1	KRH61926	AT1G71230.1	21798944
AT1G02680.1	KRH30849	AT3G10070.1	17340043
AT1G02680.1	KRH32724	AT3G10070.1	17340043
AT1G02680.1	KRH64870	AT4G20280.1	17340043
AT1G02680.1	KRH19914	AT4G34340.1	17340043
AT1G02680.1	KRH32528	AT4G34340.1	17340043
AT1G02680.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31820	Soybean	nucleus, plastid	98.1	75.74
KRH31624	Soybean	nucleus, plastid	97.14	75.0
Solyc02g078300.2.1	Tomato	nucleus	75.24	61.72
PGSC0003DMT400076353	Potato	nucleus	75.24	61.72
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	71.43	58.14
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	77.14	55.48
AT1G02680.1	Thale cress	plastid	65.71	54.76
Bra030508.1-P	Field mustard	plastid	63.81	52.34
CDY15437	Canola	plastid	63.81	52.34
Bra033338.1-P	Field mustard	nucleus, plastid	61.9	50.78
CDY15256	Canola	nucleus, plastid	61.9	50.39
Os01t0338100-00	Rice	plastid	65.71	42.33
CDY71056	Canola	mitochondrion, plastid	62.86	39.29
CDX89953	Canola	nucleus, plastid	61.9	38.69
Zm00001d040757_P002	Maize	plastid	65.71	37.3
EES00711	Sorghum	plastid	64.76	36.36
TraesCS1D01G111100.1	Wheat	plastid	68.57	34.78
HORVU1Hr1G024140.1	Barley	plastid	68.57	34.45
TraesCS5D01G143700.1	Wheat	plastid	65.71	34.33
TraesCS5A01G149100.1	Wheat	plastid	65.71	33.33
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	40.0	32.56
TraesCS1A01G107900.2	Wheat	nucleus, plastid	68.57	32.14
TraesCS1B01G130100.1	Wheat	plastid	68.57	30.9
Zm00001d040759_P002	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100786463	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	EMBL:ACUP02006073	EMBL:BT094451
UniProt:C6TAB5	EnsemblPlantsGene:GLYMA_10G002500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003712
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006357	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
EnsemblPlants:KRH31641	ProteinID:KRH31641	ProteinID:KRH31641.1	ProteinID:KRH31642.1	PFAM:PF02269	PANTHER:PTHR11380
PANTHER:PTHR11380:SF5	SUPFAM:SSF47113	InterPro:TFIID_TAF13	UniParc:UPI0001B160B2	:	:

Description

hypothetical protein

Coordinates

chr10:-:257614..262338

Molecular Weight (calculated)

11805.0 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.618

Length

105 amino acids

Sequence
(BLAST)

001: MSNSSAGTSS KPRTASSQPS ETSSKRKRGV FQKELQHMMY GFEDDPNPLP ESVALMEDIV VEYVTELVHK AQDIGSQRGK LSVEDFLYLI RKDSPKLNRC
101: TELLL

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.