Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g078300.2.1 | Tomato | nucleus | 77.52 | 78.12 |
| PGSC0003DMT400076353 | Potato | nucleus | 77.52 | 78.12 |
| Zm00001d040759_P002 | Maize | cytosol | 13.95 | 75.0 |
| KRH31641 | Soybean | nucleus, plastid | 58.14 | 71.43 |
| VIT_07s0005g01230.t01 | Wine grape | nucleus, plastid | 78.29 | 69.18 |
| KRH31820 | Soybean | nucleus, plastid | 68.99 | 65.44 |
| KRH31624 | Soybean | nucleus, plastid | 68.99 | 65.44 |
| CDY15437 | Canola | plastid | 61.24 | 61.72 |
| AT1G02680.1 | Thale cress | plastid | 59.69 | 61.11 |
| Bra030508.1-P | Field mustard | plastid | 60.47 | 60.94 |
| Bra033338.1-P | Field mustard | nucleus, plastid | 60.47 | 60.94 |
| CDY15256 | Canola | nucleus, plastid | 60.47 | 60.47 |
| Os01t0338100-00 | Rice | plastid | 73.64 | 58.28 |
| Zm00001d040757_P002 | Maize | plastid | 75.19 | 52.43 |
| EES00711 | Sorghum | plastid | 74.42 | 51.34 |
| TraesCS5D01G143700.1 | Wheat | plastid | 73.64 | 47.26 |
| CDY71056 | Canola | mitochondrion, plastid | 60.47 | 46.43 |
| CDX89953 | Canola | nucleus, plastid | 60.47 | 46.43 |
| TraesCS1D01G111100.1 | Wheat | plastid | 74.42 | 46.38 |
| HORVU1Hr1G024140.1 | Barley | plastid | 73.64 | 45.45 |
| TraesCS5A01G149100.1 | Wheat | plastid | 72.87 | 45.41 |
| TraesCS1A01G107900.2 | Wheat | nucleus, plastid | 75.19 | 43.3 |
| Solyc06g036200.1.1 | Tomato | endoplasmic reticulum | 41.86 | 41.86 |
| TraesCS1B01G130100.1 | Wheat | plastid | 73.64 | 40.77 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.4.5 | MapMan:15.3.5.3.13 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009960 | GO:GO:0009987 | GO:GO:0046982 | GO:GO:0048316 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG16270_001 | EnsemblPlants:GSMUA_AchrUn_randomP16270_001 | EnsemblPlants:GSMUA_AchrUn_randomT16270_001 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M0U9N6 |
| PFAM:PF02269 | PANTHER:PTHR11380 | PANTHER:PTHR11380:SF5 | SUPFAM:SSF47113 | InterPro:TFIID_TAF13 | UniParc:UPI0002949579 |
Description
transcription initiation factor IID, 18kD subunit family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG16270_001]
Coordinates
chrchrUn_random:+:76867754..76882460
Molecular Weight (calculated)
14504.4 Da
IEP (calculated)
7.074
GRAVY (calculated)
-0.512
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MHNSASAGPP AKPRVGSSQV SEASLKRKRG VFQKDLQHMM YGFGDDPNPL PETVSLVEDI VVEYITDMVH KAQNIASKRG RLLTEDFLYL VRKDPPKLHR
101: CTELLSMHEE LKLARKAFDV NEETLATAD
101: CTELLSMHEE LKLARKAFDV NEETLATAD
001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD
101: RELLAMQEEL KQARKAFDVD EKELVD
Arabidopsis Description
TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.