CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06174
KRH19914
KRH24348
KRH30849
KRH32528
KRH32724
KRH47589
KRH52586
KRH61926
KRH64870

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	KRH06174	AT1G17440.1	17340043
AT1G02680.1	KRH47589	AT1G17440.1	17340043
AT1G02680.1	KRH52586	AT1G71230.1	21798944
AT1G02680.1	KRH61926	AT1G71230.1	21798944
AT1G02680.1	KRH30849	AT3G10070.1	17340043
AT1G02680.1	KRH32724	AT3G10070.1	17340043
AT1G02680.1	KRH64870	AT4G20280.1	17340043
AT1G02680.1	KRH19914	AT4G34340.1	17340043
AT1G02680.1	KRH32528	AT4G34340.1	17340043
AT1G02680.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31820	Soybean	nucleus, plastid	99.26	99.26
KRH31641	Soybean	nucleus, plastid	75.0	97.14
Solyc02g078300.2.1	Tomato	nucleus	72.06	76.56
PGSC0003DMT400076353	Potato	nucleus	72.06	76.56
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	65.44	68.99
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	73.53	68.49
AT1G02680.1	Thale cress	plastid	61.76	66.67
CDY15437	Canola	plastid	61.03	64.84
Bra030508.1-P	Field mustard	plastid	60.29	64.06
Bra033338.1-P	Field mustard	nucleus, plastid	59.56	63.28
CDY15256	Canola	nucleus, plastid	59.56	62.79
Zm00001d040759_P002	Maize	cytosol	11.03	62.5
Os01t0338100-00	Rice	plastid	63.24	52.76
CDY71056	Canola	mitochondrion, plastid	60.29	48.81
CDX89953	Canola	nucleus, plastid	59.56	48.21
Zm00001d040757_P002	Maize	plastid	63.24	46.49
EES00711	Sorghum	plastid	62.5	45.45
TraesCS1D01G111100.1	Wheat	plastid	66.18	43.48
TraesCS5D01G143700.1	Wheat	plastid	63.97	43.28
HORVU1Hr1G024140.1	Barley	plastid	66.18	43.06
TraesCS5A01G149100.1	Wheat	plastid	63.97	42.03
Solyc06g036200.1.1	Tomato	endoplasmic reticulum	39.71	41.86
TraesCS1A01G107900.2	Wheat	nucleus, plastid	66.18	40.18
TraesCS1B01G130100.1	Wheat	plastid	66.18	38.63

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100796504	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	EMBL:ACUP02006072	EMBL:BT090780
UniProt:C6T027	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G001200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006357	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	ProteinID:KRH31622.1	ProteinID:KRH31623.1	EnsemblPlants:KRH31624	ProteinID:KRH31624	ProteinID:KRH31624.1
ProteinID:KRH31625.1	ProteinID:KRH31626.1	PFAM:PF02269	PANTHER:PTHR11380	PANTHER:PTHR11380:SF5	SUPFAM:SSF47113
InterPro:TFIID_TAF13	UniParc:UPI0001B152CB	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:133342..140198

Molecular Weight (calculated)

15344.1 Da

IEP (calculated)

5.066

GRAVY (calculated)

-0.726

Length

136 amino acids

Sequence
(BLAST)

001: MSNSSAGTSS KPRAASSQPS ETSSKRKRGV FQKELQHMMY GFGDDPNPLP ESVALMEDIV VEYVTELVHK AQDIGSQRGK LSVEDFLYLI RKDSPKLNRC
101: TELLSMNEEL KQARKVFESD EEKLRKVFEV DDSVEG

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.