Factsheet for Solyc06g036200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g122020.2.1
Solyc04g077290.1.1
Solyc05g010570.2.1
Solyc05g018120.1.1
Solyc06g062900.2.1
Solyc06g073150.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02680.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT1G02680.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT1G02680.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT1G02680.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT1G02680.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT1G02680.1	Solyc05g010570.2.1	AT4G20280.1	17340043
AT1G02680.1	Solyc05g018120.1.1	AT4G20280.1	17340043
AT1G02680.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT1G02680.1	Solyc04g077290.1.1	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040759_P002	Maize	cytosol	9.3	50.0
Solyc02g078300.2.1	Tomato	nucleus	49.61	50.0
PGSC0003DMT400076353	Potato	nucleus	49.61	50.0
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	41.86	41.86
Bra033338.1-P	Field mustard	nucleus, plastid	41.09	41.41
AT1G02680.1	Thale cress	plastid	40.31	41.27
CDY15437	Canola	plastid	40.31	40.62
CDY15256	Canola	nucleus, plastid	40.31	40.31
KRH31641	Soybean	nucleus, plastid	32.56	40.0
Bra030508.1-P	Field mustard	plastid	39.53	39.84
KRH31624	Soybean	nucleus, plastid	41.86	39.71
KRH31820	Soybean	nucleus, plastid	41.86	39.71
VIT_07s0005g01230.t01	Wine grape	nucleus, plastid	44.19	39.04
Os01t0338100-00	Rice	plastid	41.09	32.52
CDY71056	Canola	mitochondrion, plastid	40.31	30.95
CDX89953	Canola	nucleus, plastid	40.31	30.95
Zm00001d040757_P002	Maize	plastid	41.86	29.19
EES00711	Sorghum	plastid	41.09	28.34
HORVU1Hr1G024140.1	Barley	plastid	41.09	25.36
TraesCS1D01G111100.1	Wheat	plastid	40.31	25.12
TraesCS5D01G143700.1	Wheat	plastid	38.76	24.88
TraesCS5A01G149100.1	Wheat	plastid	39.53	24.64
TraesCS1A01G107900.2	Wheat	nucleus, plastid	40.31	23.21
TraesCS1B01G130100.1	Wheat	plastid	39.53	21.89

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.4.5	MapMan:15.3.5.3.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006357	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4C4Y8	PFAM:PF02269	PANTHER:PTHR11380
PANTHER:PTHR11380:SF5	EnsemblPlantsGene:Solyc06g036200.1	EnsemblPlants:Solyc06g036200.1.1	InterPro:TFIID_TAF13	TMHMM:TMhelix	UniParc:UPI0002765F51
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:25684352..25685771

Molecular Weight (calculated)

15404.9 Da

IEP (calculated)

4.569

GRAVY (calculated)

0.226

Length

129 amino acids

Sequence
(BLAST)

001: MEIILLEEFL LAIFLMWFYV YCFVFSQLIL DFQRNWQLLV LHYHTISEIV KLVEDIVVDY VTNMAHKAQD IATKRGKLLT EDFLFLIRKD SVKLNLCREL
101: LTMHEDLKEA QKAFEFDQEE LAHMSEGEV

Best Arabidopsis Sequence Match ( AT1G02680.1 )
(BLAST)

001: MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC
101: RELLAMQEEL KQARKAFDVD EKELVD

Arabidopsis Description

TAF13Transcription initiation factor TFIID subunit 13 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.