Factsheet for Solyc09g008150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078300.2.1
Solyc03g122020.2.1
Solyc04g078050.2.1
Solyc06g036200.1.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	Solyc02g078300.2.1	AT1G02680.1	17340043
AT4G34340.1	Solyc06g036200.1.1	AT1G02680.1	17340043
AT4G34340.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT4G34340.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT4G34340.1	Solyc04g078050.2.1	AT1G27720.1	17340043
AT4G34340.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT4G34340.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT4G34340.1	Solyc06g065700.2.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009911	Potato	nucleus	89.01	88.77
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	56.57	57.34
KRH19914	Soybean	cytosol	43.97	46.33
KRH32528	Soybean	cytosol	43.16	45.22
GSMUA_Achr9P26740_001	Banana	nucleus	38.61	44.04
GSMUA_Achr11P...	Banana	nucleus	42.36	43.77
AT4G34340.1	Thale cress	nucleus	40.48	42.78
CDX75423	Canola	nucleus	39.14	42.07
CDY69783	Canola	nucleus	40.48	42.06
GSMUA_Achr9P09310_001	Banana	nucleus	37.0	41.44
Bra011521.1-P	Field mustard	nucleus	37.8	40.75
Zm00001d041530_P001	Maize	cytosol	38.61	40.34
EES15849	Sorghum	cytosol	39.41	39.1
Os12t0574800-02	Rice	nucleus	38.07	38.8
Zm00001d041766_P001	Maize	cytosol	37.53	37.84
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	36.46	37.78
EES17247	Sorghum	cytosol	37.27	37.77
TraesCS5A01G081700.1	Wheat	cytosol	36.46	37.57
TraesCS5B01G084700.1	Wheat	cytosol	36.46	37.57
Os03t0603300-01	Rice	cytosol, plastid	26.81	35.84
TraesCS7D01G036000.1	Wheat	mitochondrion	30.29	33.24
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	30.03	32.0
TraesCSU01G065200.1	Wheat	cytosol	30.29	31.83
Solyc02g069170.1.1	Tomato	mitochondrion	20.38	27.14
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	27.08	25.7

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4CQK4	PFAM:PF07524
PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	EnsemblPlantsGene:Solyc09g008150.1	EnsemblPlants:Solyc09g008150.1.1
InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI000276BCF8	SEG:seg	:	:

Description

Transcription initiation factor TFIID subunit 8 [Source:Projected from Arabidopsis thaliana (AT4G34340) UniProtKB/Swiss-Prot;Acc:Q9SYZ9]

Coordinates

chr9:-:1613203..1614324

Molecular Weight (calculated)

41436.9 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.553

Length

373 amino acids

Sequence
(BLAST)

001: MIVGGNAEDK REKESTVDNT REERIGTDDF GRAVSRTAVA QICESIGFEI FNESALESLA DIAIKYILDL GKTANSKANI AGRTQCNVFD IIQGLEDMCA
101: STGFLRASEV NRCGLSSGIV SEMVEYVESA EEIPFSQPLP HFPVVKQPNL IPSFLQIGET PPFKHIPPWL PAFPDPHTYV RTPTWNERAS DPRADKIELA
201: RQRRKAERSL LNLQQRLVCN GSAVASTSRQ PDDVGITSSA SKSENPFLAK PFQAGEKDVD PVALPTKLSS EVDDKNHVSL LETFSPAIQA MKDGLSETVD
301: GTEKTLPDKR PAVCLEFRPG KKALGDSLDL RLWKKGSRNA SLFRRDEDRD DKKRRAELIL RQSRENQQEL TQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.