Factsheet for VIT_08s0040g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05780.t01
VIT_07s0005g01230.t01
VIT_08s0007g03700.t01
VIT_08s0040g01420.t01
VIT_09s0002g01420.t01
VIT_18s0001g09310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	VIT_07s0005g01230.t01	AT1G02680.1	17340043
AT4G34340.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT4G34340.1	VIT_18s0001g09310.t01	AT1G27720.1	17340043
AT4G34340.1	VIT_08s0007g03700.t01	AT3G10070.1	17340043
AT4G34340.1	VIT_08s0040g01420.t01	AT4G34340.1	17340043
AT4G34340.1	VIT_04s0008g05780.t01	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008150.1.1	Tomato	nucleus	57.34	56.57
VIT_14s0068g00340.t01	Wine grape	nucleus	56.25	54.91
PGSC0003DMT400009911	Potato	nucleus	55.16	54.28
GSMUA_Achr9P26740_001	Banana	nucleus	46.2	51.99
KRH19914	Soybean	cytosol	48.37	50.28
KRH32528	Soybean	cytosol	48.64	50.28
GSMUA_Achr9P09310_001	Banana	nucleus	44.02	48.65
GSMUA_Achr11P...	Banana	nucleus	47.28	48.2
AT4G34340.1	Thale cress	nucleus	42.66	44.48
CDX75423	Canola	nucleus	41.03	43.52
CDY69783	Canola	nucleus	42.39	43.45
Zm00001d041530_P001	Maize	cytosol	42.12	43.42
Bra011521.1-P	Field mustard	nucleus	40.22	42.77
Zm00001d041766_P001	Maize	cytosol	42.12	41.89
EES17247	Sorghum	cytosol	41.85	41.85
Os12t0574800-02	Rice	nucleus	41.3	41.53
EES15849	Sorghum	cytosol	42.39	41.49
TraesCS5A01G081700.1	Wheat	cytosol	39.4	40.06
TraesCS5B01G084700.1	Wheat	cytosol	39.4	40.06
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	39.13	40.0
Os03t0603300-01	Rice	cytosol, plastid	28.26	37.28
TraesCS7D01G036000.1	Wheat	mitochondrion	32.88	35.59
TraesCSU01G065200.1	Wheat	cytosol	33.97	35.21
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	32.61	34.29
VIT_01s0011g01670.t01	Wine grape	nucleus	22.55	32.68
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	27.99	26.21

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100260255	wikigene:100260255	MapMan:15.3.5.3.8	InterPro:BTP	ProteinID:CCB57100
ProteinID:CCB57100.1	UniProt:F6HR51	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100260255	wikigene:LOC100260255	PFAM:PF07524
PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	SUPFAM:SSF47113	InterPro:TAF8
InterPro:TFIID_su8_C	UniParc:UPI00015CAE99	ArrayExpress:VIT_08s0040g01420	EnsemblPlantsGene:VIT_08s0040g01420	EnsemblPlants:VIT_08s0040g01420.t01	unigene:Vvi.13833
RefSeq:XP_002282259	RefSeq:XP_002282259.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:12541911..12543540

Molecular Weight (calculated)

40212.4 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.439

Length

368 amino acids

Sequence
(BLAST)

001: MSDGGEDDRR NSDNNAPKRA GPDEFGRAVS KIAVAQICES VGFEGFQDSA LQALSNIAVR YLCDVGKTAN FCANLAGRTQ CNVFDVIRGL EDLGSSEGFS
101: GASGVDQCIV SSGTVREIVE YVNSAKEIPF AQPVPRFPVV RNCKATPSFV QMGETPVGKH IPPWLPAFPD SHTYIQTPMW NERATDPRAD KLEQARQRRK
201: AERSLLSLQQ RLVCNGSASA STSVGRCDDA EASRAAEGNP YLASPLQFGE KDVSTVVLPA KLLDDLVVDN HVSVLETFAP AIEAVKNSFV DSGESEKNVV
301: PEKRSAVHFK LRTGKKILGE SVDLRLKNKS VGKVVSLIGR DEERDDKKRR AEYILRQSME NPQELTQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.