Factsheet for VIT_09s0002g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g01410.t01
VIT_03s0038g00960.t01
VIT_04s0008g05780.t01
VIT_07s0005g01230.t01
VIT_08s0007g03700.t01
VIT_08s0040g01420.t01
VIT_09s0002g01420.t01
VIT_12s0028g03940.t01
VIT_18s0001g09310.t01
VIT_19s0093g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	VIT_07s0005g01230.t01	AT1G02680.1	17340043
AT1G17440.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT1G17440.1	VIT_18s0001g09310.t01	AT1G27720.1	17340043
AT1G17440.1	VIT_12s0028g03940.t01	AT1G32750.1	17340043
AT1G17440.1	VIT_01s0010g01410.t01	AT1G50300.1	17340043
AT1G17440.1	VIT_08s0007g03700.t01	AT3G10070.1	17340043
AT1G17440.1	VIT_19s0093g00470.t01	AT4G20280.1	17340043
AT1G17440.1	VIT_08s0040g01420.t01	AT4G34340.1	17340043
AT1G17440.1	VIT_04s0008g05780.t01	AT5G25150.1	17340043
AT1G17440.1	VIT_03s0038g00960.t01	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012398	Potato	nucleus	19.25	59.47
KRH06174	Soybean	nucleus, plastid	33.05	55.59
Solyc06g062900.2.1	Tomato	nucleus	22.49	55.0
KRH47589	Soybean	nucleus, plastid	55.37	54.26
PGSC0003DMT400006601	Potato	nucleus, plastid	55.88	51.33
Solyc03g122020.2.1	Tomato	nucleus, plastid	54.0	49.38
CDY26245	Canola	plastid	52.64	47.47
AT1G17440.1	Thale cress	plastid	53.49	45.97
Bra025975.1-P	Field mustard	plastid	49.91	45.29
CDY48302	Canola	plastid	44.63	44.26
CDX81826	Canola	plastid	37.65	41.08
CDY21749	Canola	plastid	38.84	40.71
Bra030989.1-P	Field mustard	plastid	40.89	39.41
GSMUA_Achr7P10670_001	Banana	plastid	41.74	38.1
Zm00001d042879_P002	Maize	plastid	29.98	37.13
TraesCS3D01G356600.1	Wheat	nucleus, plastid	32.03	34.69
Zm00001d012396_P003	Maize	nucleus, plastid	32.54	34.66
TraesCS3B01G395300.2	Wheat	nucleus, plastid	31.35	34.14
TraesCS3A01G362900.1	Wheat	nucleus, plastid	31.69	34.13
Os01t0846900-01	Rice	nucleus	31.35	33.95
KXG33694	Sorghum	nucleus, plastid	31.35	33.21
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	32.03	32.92
TraesCS6D01G151600.1	Wheat	nucleus, plastid	22.49	31.58
VIT_08s0007g03700.t01	Wine grape	nucleus	18.91	29.84
HORVU6Hr1G032840.2	Barley	nucleus, plastid	21.12	29.59
TraesCS6A01G161300.1	Wheat	nucleus, plastid	17.21	24.05
TraesCS6B01G190100.1	Wheat	nucleus, plastid	16.52	23.21

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100248501	wikigene:100248501	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	ProteinID:CBI35882
ProteinID:CBI35882.3	ncoils:Coil	UniProt:D7TZT6	EMBL:FN596494	GO:GO:0000124	GO:GO:0001102
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0017025	GO:GO:0019538
GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072
EntrezGene:LOC100248501	wikigene:LOC100248501	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3
SUPFAM:SSF47113	InterPro:TAF12	TIGR:TC62063	InterPro:TFIID_TAF12_dom	UniParc:UPI0001BE4AAF	ArrayExpress:VIT_09s0002g01420
EnsemblPlantsGene:VIT_09s0002g01420	EnsemblPlants:VIT_09s0002g01420.t01	unigene:Vvi.8227	RefSeq:XP_002264851	RefSeq:XP_002264851.2	SEG:seg

Description

No Description!

Coordinates

chr9:-:1193649..1203172

Molecular Weight (calculated)

63662.1 Da

IEP (calculated)

10.314

GRAVY (calculated)

-0.831

Length

587 amino acids

Sequence
(BLAST)

001: MAESASSSPK PMQPTNPIDP IPQNQSSSSN PPIPSPSPSI DLPQISSPPL PPLHQSQSQP QQILPGLNYP IQQTLQRSPS MSRINSMQSQ TQQQQQQPMM
101: VRQQTGMYSQ MNFGGSAIQQ AQNQQQLGGG AAGGGGGGNL SRSALMGQTG HLSPMLSGQA AAAAAVAQFS LLTSPRQKAG LVQGSQFHPG NAPGQSLSGM
201: QAIGMMGPLN LSSQLRPNGT LTYAQQRINQ GQMRQQLTQQ SQLTPSQAQS RPRTSSLAFM NPQLSSLTQN GQPGMLQNSL SQQQWLKQMP AMSTPGSPSY
301: RLQPRQQVLY QQQLASSPQL HQNPMALNPQ QLSQLVQQQP QMGHQQLQQQ IQSQQQQQQQ QQQQQQQQQQ QQQPTLHQQQ QQQASPRMAG PAGQKSLSLT
401: GSQPDATASG TTTPGGSSSQ GTEASNQLLG KRKIQDLVSQ VDSQGKLDPE VEDLLLEIAD DFIDSVTTFA CSLAKHRKSS TLESKDLLLH LEKNWDLKIP
501: GYSSEEQKNQ TKPSSSELHK KRVDMVRALM ESSHSETNAN AKEMMRQGLG NNPVGANPMM RPSPSPSAEP LVSQSTSSQM LQQITRF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.