Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G032840.2 | Barley | nucleus, plastid | 80.14 | 79.95 |
| TraesCS6B01G190100.1 | Wheat | nucleus, plastid | 79.43 | 79.43 |
| TraesCS6A01G161300.1 | Wheat | nucleus, plastid | 71.29 | 70.95 |
| Os01t0846900-01 | Rice | nucleus | 54.07 | 41.7 |
| Zm00001d042879_P002 | Maize | plastid | 46.41 | 40.93 |
| TraesCS3D01G356600.1 | Wheat | nucleus, plastid | 52.39 | 40.41 |
| KXG33694 | Sorghum | nucleus, plastid | 51.44 | 38.81 |
| Zm00001d012396_P003 | Maize | nucleus, plastid | 48.8 | 37.02 |
| PGSC0003DMT400012398 | Potato | nucleus | 14.83 | 32.63 |
| Solyc06g062900.2.1 | Tomato | nucleus | 17.46 | 30.42 |
| KRH06174 | Soybean | nucleus, plastid | 23.92 | 28.65 |
| KRH47589 | Soybean | nucleus, plastid | 33.01 | 23.04 |
| VIT_09s0002g01420.t01 | Wine grape | nucleus, plastid | 31.58 | 22.49 |
| CDX81826 | Canola | plastid | 28.71 | 22.3 |
| CDY48302 | Canola | plastid | 31.34 | 22.13 |
| CDY26245 | Canola | plastid | 34.21 | 21.97 |
| Solyc03g122020.2.1 | Tomato | nucleus, plastid | 33.01 | 21.5 |
| GSMUA_Achr7P10670_001 | Banana | plastid | 33.01 | 21.46 |
| PGSC0003DMT400006601 | Potato | nucleus, plastid | 32.3 | 21.13 |
| Bra025975.1-P | Field mustard | plastid | 32.54 | 21.02 |
| CDY21749 | Canola | plastid | 27.27 | 20.36 |
| AT1G17440.1 | Thale cress | plastid | 33.25 | 20.35 |
| Bra030989.1-P | Field mustard | plastid | 27.51 | 18.88 |
| TraesCS3D01G364400.1 | Wheat | cytosol, plastid | 24.4 | 18.65 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.4.3.5 | MapMan:15.3.5.3.12 | GO:GO:0000124 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046695 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PD012998 |
| PFAM:PF03847 | PANTHER:PTHR12264 | PANTHER:PTHR12264:SF3 | SUPFAM:SSF47113 | InterPro:TAF12 | InterPro:TFIID_TAF12_dom |
| EnsemblPlantsGene:TraesCS6D01G151600 | EnsemblPlants:TraesCS6D01G151600.1 | TIGR:cd07981 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6D:+:124897409..124898665
Molecular Weight (calculated)
43812.8 Da
IEP (calculated)
9.987
GRAVY (calculated)
-0.562
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPPSLAST ATPQPDQLAT SASIPQNANP QIPLPPIVSS AQVNPASAAT GGRSTDPPQL QAPSRAQAAE GAGGFGAIHR SGPASLAPAV GQPPRYATAG
101: TTYGTQIAFP GGGGQLGQQP GLRAAMFGQG QPRMLQGQGN AASAAQYGLQ FQPTMMAQPG QRGVVQGVQF NTPSAQAQSM GASLMNQMRP NGITTPYGAQ
201: SQQRSAYHAQ MRPQQQPGSS QNGPVVQMLP THQMQSAMAS PVSPHQRQQE QMMQLIQQLQ QRGLNRQQIA QALQRLPHLN AQHLNQQQRQ QQQASPRMPA
301: SAAGKPANTA GSQPATPSSG GTAAGANAPH QGGGNCSQLI GKRKIHDLVA QVDPQCEVDP EVEDLILEIA DDFINTAADF ACRLAKHRKS SVVEAKDVLL
401: HLQKNCHLSA PGFSQERM
101: TTYGTQIAFP GGGGQLGQQP GLRAAMFGQG QPRMLQGQGN AASAAQYGLQ FQPTMMAQPG QRGVVQGVQF NTPSAQAQSM GASLMNQMRP NGITTPYGAQ
201: SQQRSAYHAQ MRPQQQPGSS QNGPVVQMLP THQMQSAMAS PVSPHQRQQE QMMQLIQQLQ QRGLNRQQIA QALQRLPHLN AQHLNQQQRQ QQQASPRMPA
301: SAAGKPANTA GSQPATPSSG GTAAGANAPH QGGGNCSQLI GKRKIHDLVA QVDPQCEVDP EVEDLILEIA DDFINTAADF ACRLAKHRKS SVVEAKDVLL
401: HLQKNCHLSA PGFSQERM
001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY
Arabidopsis Description
TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.