Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G505200.1 | Wheat | nucleus | 98.55 | 98.55 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 98.44 | 98.44 |
| HORVU7Hr1G115120.1 | Barley | plastid | 81.18 | 92.45 |
| TraesCS7A01G515000.1 | Wheat | plastid | 81.46 | 82.1 |
| Os06t0645700-01 | Rice | cytosol, nucleus | 3.23 | 81.69 |
| Os06t0645800-01 | Rice | nucleus | 39.14 | 79.89 |
| EER90111 | Sorghum | nucleus | 75.78 | 75.44 |
| Zm00001d046579_P019 | Maize | nucleus | 74.78 | 74.32 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 13.53 | 71.68 |
| CDY22837 | Canola | cytosol | 2.39 | 57.33 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 56.18 | 55.05 |
| Solyc07g006820.2.1 | Tomato | nucleus | 49.33 | 48.6 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 51.0 | 47.88 |
| KRH62676 | Soybean | nucleus | 49.11 | 46.69 |
| KRH39697 | Soybean | nucleus | 48.5 | 46.08 |
| CDY49818 | Canola | nucleus | 2.73 | 43.75 |
| AT1G32750.1 | Thale cress | nucleus | 46.1 | 43.15 |
| Bra018905.1-P | Field mustard | nucleus | 3.4 | 40.94 |
| AT3G19040.2 | Thale cress | nucleus | 39.2 | 39.29 |
Protein Annotations
| Gene3D:1.20.920.10 | MapMan:15.3.4.4.4 | MapMan:15.3.5.3.2 | MapMan:18.4.7.3 | Gene3D:3.10.20.90 | InterPro:Bromodomain |
| InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:IPR001487 | InterPro:IPR036427 | PFAM:PF00240 | PFAM:PF00439 | PFAM:PF09247 |
| PFAM:PF12157 | PRINTS:PR00503 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS50053 | PANTHER:PTHR13900 |
| SMART:SM00213 | SMART:SM00297 | SUPFAM:SSF47055 | SUPFAM:SSF47370 | SUPFAM:SSF54236 | InterPro:TAFII-230_TBP-bd_sf |
| InterPro:TAF_II_230-bd | InterPro:TFIID_sub1_DUF3591 | EnsemblPlantsGene:TraesCS7A01G514800 | EnsemblPlants:TraesCS7A01G514800.1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| TIGR:cd01769 | TIGR:cd04369 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7A:+:700689375..700706679
Molecular Weight (calculated)
201477.0 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.777
Length
1796 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDGERRDED VATTSAADDD DDEDYEEPGG ENHFLGFMFG NVDDAGDLDA DYLDEDAKEH LFALADKLGA SLKDIDLTKS SPATADPSEQ DYDEKAEDAV
0101: DYEDIDEQYD GPEVEAATEE DHLLSKKDYF SSNTMFASVS SKVSVFDEEN YDEDEEPPND IELPGDNVIQ DVISAEQPEI SPSNDNPAIG KVSSPLPQSQ
0201: ETMDVEYEVC QEEIDTEEDQ LESKSATTLP VLCIEDGSVI LKFSEIFGAQ EPVRKAKTDQ HKRPVNKELR ITNISDIVED DEEVFLRSTI QDVPSLKHIK
0301: TNEDFIESDS DELISSDTFG FKDLCLSEQP MKDVHKEFPT AKQTLVCPDV YPLEHEDWEN GIIWGNSPAS ESQSCLKSCV ISEESSDAHS EDEAKDYGYV
0401: SGRCDVQDKN NGSPVIREPF GCTEMPASAS YHSPENSYPP LIKETPQEKN DLDHAEPNNI NGTVKINTMK CLSNLSLLNK ELLEGSWLDN VIWDPSEDTP
0501: KPKLILDLKD DQMLFEILDE KNGDHLRSHA RAMIVSRPMK TATVENVGHN NQAITLDAQF NISNDKFYSN RKMSQQAKSH TKKRSSMGIK VVHSVPGQKL
0601: QTMKPKLSTN EIANFHRPKA KWYPHENKLA AELQGAACSH GSMTVIVMTL AGKGVKLLVN AEETPLSVKS KASKKLEFRP SEKIKLFGYG KELQDDISLA
0701: MQNVRPNSIL HVVRTEVHLW PKAQKLPGED KALRPPGAFR KKADLSVKDG HVFLMEYCEE RPLLLANAGM GARLCTYYQK TSPTDQTAIS LRSNNDGLGT
0801: VLAIEPADKS PFLGDVRSGS QQSCLETNMY RAPAFPHKLA STDYLLVRSP KGMLSLRRID KLYAVGQQEP HMEVFSPGTK NLQNHLLNRM LVYVYREFRL
0901: RERPGVLSQI RADEVPIQHP LTEAIVRKRL KHCADLKKGP NGHYFWTQRP DFRIPSEEEL RRLVSPESVC CHESMQAGLH RLNRLGIEKL TQPVGLASAM
1001: NQLPDEAIEL AAAAHIEREL QITSWNLTSN FVACTNQDRE NIERLEITGV GDPSGRGLGF SYVRVTPKAP VSNSSHKKKS AAAKGTTVTG TDADLRRLSM
1101: DAARELLLKF GVPDEQIDKL TRWHRIAMVR KLSSEQAASG ITIDEIPVSK FARGQRMSFM QLQQQTKEKC QEIWDRQIQS LSAIDGDDNG SDTEAHSDLD
1201: SFAGDLENLL DAEEFDDEEV GTADLRSDKA DGMRGLKMRR CPTQAQFNEE IQDDQAEAAL VKKLLEESGN DPKRKKQPVD TTNQGANKTK QFKALTPKES
1301: TPRGAKEVDS SFTEGGLSSK LKTKLAVDAN DIILVKKKNV QGKDGLKEKR QGARGDSLVC GACGQLGHMR TNKLCPKYGE DPETSEMDAI SYRPNPLDVA
1401: SHGQTKTLGR RLVAKVSSDV PETEGQESIE KIKPVKFRCG APEKSLERNM SVAGSLVSDK LTTDSTDLRS TGKVSKIKIY SKPKTEDYPP DTPKPSVVIR
1501: PPAEVEKDVP RKKVIIKQPK GHVDQLRAIE VRSSQEPRKI RKIAELSSFE KNSRDDDGWY AGEPSQMNSS HDRLGRDGNR KSKEVTGGDE SWRAFKEQRE
1601: RQEQRLIEAR IYSREEELQK AKKKSKKKKK HDFRDADILD HRPYRNDRKV PERDRASKRR TPADMTDYAP SAKRRRGGEV ELSNILEKIV DHLRNQTAIS
1701: LLFLKPVTKK VAPDYYDVIQ RPMDLGTIRD KARKMEYKNR YEFRNDVAQI ADNAHMYNET RHPHIPPLAD ELLELCDNLL DESADVLDDA ESAMES
0101: DYEDIDEQYD GPEVEAATEE DHLLSKKDYF SSNTMFASVS SKVSVFDEEN YDEDEEPPND IELPGDNVIQ DVISAEQPEI SPSNDNPAIG KVSSPLPQSQ
0201: ETMDVEYEVC QEEIDTEEDQ LESKSATTLP VLCIEDGSVI LKFSEIFGAQ EPVRKAKTDQ HKRPVNKELR ITNISDIVED DEEVFLRSTI QDVPSLKHIK
0301: TNEDFIESDS DELISSDTFG FKDLCLSEQP MKDVHKEFPT AKQTLVCPDV YPLEHEDWEN GIIWGNSPAS ESQSCLKSCV ISEESSDAHS EDEAKDYGYV
0401: SGRCDVQDKN NGSPVIREPF GCTEMPASAS YHSPENSYPP LIKETPQEKN DLDHAEPNNI NGTVKINTMK CLSNLSLLNK ELLEGSWLDN VIWDPSEDTP
0501: KPKLILDLKD DQMLFEILDE KNGDHLRSHA RAMIVSRPMK TATVENVGHN NQAITLDAQF NISNDKFYSN RKMSQQAKSH TKKRSSMGIK VVHSVPGQKL
0601: QTMKPKLSTN EIANFHRPKA KWYPHENKLA AELQGAACSH GSMTVIVMTL AGKGVKLLVN AEETPLSVKS KASKKLEFRP SEKIKLFGYG KELQDDISLA
0701: MQNVRPNSIL HVVRTEVHLW PKAQKLPGED KALRPPGAFR KKADLSVKDG HVFLMEYCEE RPLLLANAGM GARLCTYYQK TSPTDQTAIS LRSNNDGLGT
0801: VLAIEPADKS PFLGDVRSGS QQSCLETNMY RAPAFPHKLA STDYLLVRSP KGMLSLRRID KLYAVGQQEP HMEVFSPGTK NLQNHLLNRM LVYVYREFRL
0901: RERPGVLSQI RADEVPIQHP LTEAIVRKRL KHCADLKKGP NGHYFWTQRP DFRIPSEEEL RRLVSPESVC CHESMQAGLH RLNRLGIEKL TQPVGLASAM
1001: NQLPDEAIEL AAAAHIEREL QITSWNLTSN FVACTNQDRE NIERLEITGV GDPSGRGLGF SYVRVTPKAP VSNSSHKKKS AAAKGTTVTG TDADLRRLSM
1101: DAARELLLKF GVPDEQIDKL TRWHRIAMVR KLSSEQAASG ITIDEIPVSK FARGQRMSFM QLQQQTKEKC QEIWDRQIQS LSAIDGDDNG SDTEAHSDLD
1201: SFAGDLENLL DAEEFDDEEV GTADLRSDKA DGMRGLKMRR CPTQAQFNEE IQDDQAEAAL VKKLLEESGN DPKRKKQPVD TTNQGANKTK QFKALTPKES
1301: TPRGAKEVDS SFTEGGLSSK LKTKLAVDAN DIILVKKKNV QGKDGLKEKR QGARGDSLVC GACGQLGHMR TNKLCPKYGE DPETSEMDAI SYRPNPLDVA
1401: SHGQTKTLGR RLVAKVSSDV PETEGQESIE KIKPVKFRCG APEKSLERNM SVAGSLVSDK LTTDSTDLRS TGKVSKIKIY SKPKTEDYPP DTPKPSVVIR
1501: PPAEVEKDVP RKKVIIKQPK GHVDQLRAIE VRSSQEPRKI RKIAELSSFE KNSRDDDGWY AGEPSQMNSS HDRLGRDGNR KSKEVTGGDE SWRAFKEQRE
1601: RQEQRLIEAR IYSREEELQK AKKKSKKKKK HDFRDADILD HRPYRNDRKV PERDRASKRR TPADMTDYAP SAKRRRGGEV ELSNILEKIV DHLRNQTAIS
1701: LLFLKPVTKK VAPDYYDVIQ RPMDLGTIRD KARKMEYKNR YEFRNDVAQI ADNAHMYNET RHPHIPPLAD ELLELCDNLL DESADVLDDA ESAMES
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.