Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90111 | Sorghum | nucleus | 93.41 | 93.57 |
| Os06t0645800-01 | Rice | nucleus | 38.35 | 78.75 |
| TraesCS7A01G514800.1 | Wheat | nucleus | 74.32 | 74.78 |
| TraesCS7D01G505200.1 | Wheat | nucleus | 74.27 | 74.72 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 73.99 | 74.44 |
| Os06t0645700-01 | Rice | cytosol, nucleus | 2.88 | 73.24 |
| HORVU7Hr1G115120.1 | Barley | plastid | 62.65 | 71.78 |
| TraesCS7D01G505400.1 | Wheat | nucleus | 68.57 | 70.32 |
| TraesCS7B01G431700.2 | Wheat | nucleus | 68.29 | 70.03 |
| TraesCS7A01G515000.1 | Wheat | plastid | 67.79 | 68.74 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 12.01 | 64.01 |
| CDY22837 | Canola | cytosol | 2.66 | 64.0 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 55.84 | 55.05 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 52.02 | 49.14 |
| Solyc07g006820.2.1 | Tomato | nucleus | 49.2 | 48.77 |
| KRH62676 | Soybean | nucleus | 48.98 | 46.85 |
| KRH39697 | Soybean | nucleus | 48.7 | 46.56 |
| Bra018905.1-P | Field mustard | nucleus | 3.71 | 44.97 |
| CDY49818 | Canola | nucleus | 2.77 | 44.64 |
| AT1G32750.1 | Thale cress | nucleus | 45.99 | 43.3 |
| AT3G19040.2 | Thale cress | nucleus | 39.13 | 39.45 |
Protein Annotations
| Gene3D:1.20.920.10 | EntrezGene:103638720 | MapMan:15.3.4.4.4 | MapMan:15.3.5.3.2 | MapMan:18.4.7.3 | Gene3D:3.10.20.90 |
| UniProt:A0A1D6P3J9 | ProteinID:AQL04572.1 | InterPro:Bromodomain | InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR001487 | InterPro:IPR036427 | PFAM:PF00240 |
| PFAM:PF00439 | PFAM:PF09247 | PFAM:PF12157 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS50053 |
| PANTHER:PTHR13900 | SMART:SM00213 | SMART:SM00297 | SUPFAM:SSF47055 | SUPFAM:SSF47370 | SUPFAM:SSF54236 |
| InterPro:TAFII-230_TBP-bd_sf | InterPro:TAF_II_230-bd | InterPro:TFIID_sub1_DUF3591 | UniParc:UPI000843D8B7 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| EnsemblPlantsGene:Zm00001d046579 | EnsemblPlants:Zm00001d046579_P019 | EnsemblPlants:Zm00001d046579_T019 | SEG:seg | : | : |
Description
Transcription initiation factor TFIID subunit 1
Coordinates
chr9:+:96780125..96809764
Molecular Weight (calculated)
203160.0 Da
IEP (calculated)
5.217
GRAVY (calculated)
-0.755
Length
1807 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDSELHEEE NPTNSAVDDD DDEDYEEPGG GNHLLGFMFG NVDDSGDLDA DYLDEDAKEH LFALADKLGP SLKDIDLMKS SPAPTDPSEQ DYDEKAEDAV
0101: DYEDIDEEYD GPEVEATTEE DNVLSKKDYF SSSTVYASVN STVSVFDDEN YDEEEEPPND NEPPGDSAAQ NLSSVSIEQA DTTTSSDNLA MEKIGLLSHP
0201: EENMDFEYED LENEKGTGEG QLEPESATSL PVLCIEDGNA ILRFSEIFGI QEPVRKVKTD HHKRPVDKEL QIANVADNVE EDEELILRST MQNFSTLKHI
0301: HVNEDFVESD SDESISDVTL RLKDSCLSEQ PMKDVHMDIR IVQRSPTCPD FYPLEHYDWE SDIIWNNSPA TDQQAYAKIC ESEESEDTHG EDQGKDYGQA
0401: SRCWDVQSKT NGSPVIKETF CCTEMPAPAN YCPPGKSYPP LTNEDNLDHI MPNNLDDAVK IDTMVRLNNL SVLNRELLEG SWLDNIIWDP NEVTPKPKLI
0501: FDLKDDHMLF EILDEKNVDH LQSHARAMIV SQSTKTSTPT VDNFGDQPKP LSGRFNISND KFYSNRKTPQ QAKSHTKKRA LMGIKVVHSA PAHKLQTMKP
0601: VLSNKEIANF HRPRAKWYPH ENKIASQLQG PACSHGRMAV LLMSLGGKGV KILVNAEDTP VSVKLKASKK FELKPSEKIK LFCSGKELQD DISLAMQNVR
0701: PNSIVHAVRT EVYLWPKAQK LPGEDKPLRP PGAFRKKTDL SIKDGHVFLM EYCEERPLLL SNAGMGARLC TYYQKTTPTD QTAASLRNNS DGLGTVLAID
0801: PADKSPFLGE IHSGSHQSCL ETNMYRSPVF PHKVAPTDYL LVRSAKGALS LRRIDKLYVV GQQEPHMEVF SPGTKNMQNY LLNRVLAYVY REFRARERPD
0901: AIPQIRADEL PIQSPLTEAI VKKRLKHCAD LKKGPKGHFF WTQRPDFRVP SEEELRRLLT PESVCCYESM QAGLYRLKRL GILKLTQPVG LASAMNQLPD
1001: EAIELAAASH IERELQITSW NLTSNFVACT NQDRENIERL EITGVGDPSG RGLGFSYVRV APKAPASNSV LKKKSAAAKG TTVTGTDADL RRLSMDAARE
1101: LLLKFGVPEE QIDKLTRWHR IAMVRKLSSE QAASGITIDE IPVSKFARGQ RMSFLQLQQQ TREKCQEIWD RQVQSLSALD GDDNASDTEA HSDLDSFAGD
1201: LENLLDAEEF DDEDTSTADL RIDKADGMRG LKMRRCSTQA QINKEIEDDE TEASLAKKLL EDADDGNDVK RKKQPVELTN CGTSLVANKM KQSKTGQTIK
1301: SSGYAGALTP KENTPREGKE VENSFVEGGL SSKLKPKMAL DVNETVLVKK KSVPGKDGPK EKKQGARGDS LVCGACSQVG HMRTNKLCPK YREDPEMSEM
1401: DANSVKPNSM DINHLQAKTP KRLITKVSSE VTETEGPEGI EKTKSVPVKF KVGAPDKSLE RNMSVSVSLV SDKRVMDVTD SRSTGKVNKI VIPNKMKSDD
1501: FPPDTPKPSV VFRPPAEEKD VPRKKITIKQ PKGIDQQRHV ESRSVQEPTR KTRKIVELSS FEDKSREDDH WVGGEPSQVN SSHGRRLGLE GKISKATMEN
1601: ERSWRDFEER REMPQARLFD ATIYASREED HLKAKKKNKK KKKHEFKDDD LLDHRPYRND RRVPERHRAL KRSSPAPVVG YASSAKRRRG GEVELSNILE
1701: KVVDHLRGLS GSLLFLKPVT KKEASDYLDI IRYPMDLGTI RDKVRKMVYR NRDEFRHDVA QIQLNAHIYN DTRYPHIPPL ADELMEVCDH LLYENADLLT
1801: EAEDAIE
0101: DYEDIDEEYD GPEVEATTEE DNVLSKKDYF SSSTVYASVN STVSVFDDEN YDEEEEPPND NEPPGDSAAQ NLSSVSIEQA DTTTSSDNLA MEKIGLLSHP
0201: EENMDFEYED LENEKGTGEG QLEPESATSL PVLCIEDGNA ILRFSEIFGI QEPVRKVKTD HHKRPVDKEL QIANVADNVE EDEELILRST MQNFSTLKHI
0301: HVNEDFVESD SDESISDVTL RLKDSCLSEQ PMKDVHMDIR IVQRSPTCPD FYPLEHYDWE SDIIWNNSPA TDQQAYAKIC ESEESEDTHG EDQGKDYGQA
0401: SRCWDVQSKT NGSPVIKETF CCTEMPAPAN YCPPGKSYPP LTNEDNLDHI MPNNLDDAVK IDTMVRLNNL SVLNRELLEG SWLDNIIWDP NEVTPKPKLI
0501: FDLKDDHMLF EILDEKNVDH LQSHARAMIV SQSTKTSTPT VDNFGDQPKP LSGRFNISND KFYSNRKTPQ QAKSHTKKRA LMGIKVVHSA PAHKLQTMKP
0601: VLSNKEIANF HRPRAKWYPH ENKIASQLQG PACSHGRMAV LLMSLGGKGV KILVNAEDTP VSVKLKASKK FELKPSEKIK LFCSGKELQD DISLAMQNVR
0701: PNSIVHAVRT EVYLWPKAQK LPGEDKPLRP PGAFRKKTDL SIKDGHVFLM EYCEERPLLL SNAGMGARLC TYYQKTTPTD QTAASLRNNS DGLGTVLAID
0801: PADKSPFLGE IHSGSHQSCL ETNMYRSPVF PHKVAPTDYL LVRSAKGALS LRRIDKLYVV GQQEPHMEVF SPGTKNMQNY LLNRVLAYVY REFRARERPD
0901: AIPQIRADEL PIQSPLTEAI VKKRLKHCAD LKKGPKGHFF WTQRPDFRVP SEEELRRLLT PESVCCYESM QAGLYRLKRL GILKLTQPVG LASAMNQLPD
1001: EAIELAAASH IERELQITSW NLTSNFVACT NQDRENIERL EITGVGDPSG RGLGFSYVRV APKAPASNSV LKKKSAAAKG TTVTGTDADL RRLSMDAARE
1101: LLLKFGVPEE QIDKLTRWHR IAMVRKLSSE QAASGITIDE IPVSKFARGQ RMSFLQLQQQ TREKCQEIWD RQVQSLSALD GDDNASDTEA HSDLDSFAGD
1201: LENLLDAEEF DDEDTSTADL RIDKADGMRG LKMRRCSTQA QINKEIEDDE TEASLAKKLL EDADDGNDVK RKKQPVELTN CGTSLVANKM KQSKTGQTIK
1301: SSGYAGALTP KENTPREGKE VENSFVEGGL SSKLKPKMAL DVNETVLVKK KSVPGKDGPK EKKQGARGDS LVCGACSQVG HMRTNKLCPK YREDPEMSEM
1401: DANSVKPNSM DINHLQAKTP KRLITKVSSE VTETEGPEGI EKTKSVPVKF KVGAPDKSLE RNMSVSVSLV SDKRVMDVTD SRSTGKVNKI VIPNKMKSDD
1501: FPPDTPKPSV VFRPPAEEKD VPRKKITIKQ PKGIDQQRHV ESRSVQEPTR KTRKIVELSS FEDKSREDDH WVGGEPSQVN SSHGRRLGLE GKISKATMEN
1601: ERSWRDFEER REMPQARLFD ATIYASREED HLKAKKKNKK KKKHEFKDDD LLDHRPYRND RRVPERHRAL KRSSPAPVVG YASSAKRRRG GEVELSNILE
1701: KVVDHLRGLS GSLLFLKPVT KKEASDYLDI IRYPMDLGTI RDKVRKMVYR NRDEFRHDVA QIQLNAHIYN DTRYPHIPPL ADELMEVCDH LLYENADLLT
1801: EAEDAIE
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.