Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G431700.2 | Wheat | nucleus | 95.35 | 95.35 |
| TraesCS7A01G515000.1 | Wheat | plastid | 93.02 | 91.98 |
| TraesCS7D01G505200.1 | Wheat | nucleus | 84.39 | 82.8 |
| Os06t0645700-01 | Rice | cytosol, nucleus | 3.01 | 74.65 |
| Os06t0645800-01 | Rice | nucleus | 35.93 | 71.93 |
| EER90111 | Sorghum | nucleus | 71.57 | 69.9 |
| Zm00001d046579_P019 | Maize | nucleus | 70.32 | 68.57 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 12.6 | 65.49 |
| CDY22837 | Canola | cytosol | 2.61 | 61.33 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 53.75 | 51.66 |
| CDY49818 | Canola | nucleus | 2.95 | 46.43 |
| Solyc07g006820.2.1 | Tomato | nucleus | 47.62 | 46.02 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 49.15 | 45.27 |
| KRH62676 | Soybean | nucleus | 47.73 | 44.52 |
| Bra018905.1-P | Field mustard | nucleus | 3.75 | 44.3 |
| KRH39697 | Soybean | nucleus | 47.45 | 44.23 |
| AT1G32750.1 | Thale cress | nucleus | 44.61 | 40.96 |
| AT3G19040.2 | Thale cress | nucleus | 37.91 | 37.28 |
Protein Annotations
| Gene3D:1.20.920.10 | MapMan:15.3.4.4.4 | MapMan:15.3.5.3.2 | MapMan:18.4.7.3 | Gene3D:3.10.20.90 | InterPro:Bromodomain |
| InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:IPR001487 | InterPro:IPR036427 | PFAM:PF00240 | PFAM:PF00439 | PFAM:PF09247 |
| PFAM:PF12157 | PRINTS:PR00503 | ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS50053 | PANTHER:PTHR13900 |
| SMART:SM00213 | SMART:SM00297 | SUPFAM:SSF47055 | SUPFAM:SSF47370 | SUPFAM:SSF54236 | InterPro:TAFII-230_TBP-bd_sf |
| InterPro:TAF_II_230-bd | InterPro:TFIID_sub1_DUF3591 | EnsemblPlantsGene:TraesCS7D01G505400 | EnsemblPlants:TraesCS7D01G505400.1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom |
| TIGR:cd01769 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:610841139..610855432
Molecular Weight (calculated)
197578.0 Da
IEP (calculated)
5.032
GRAVY (calculated)
-0.727
Length
1762 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSDGERDEDD VATTSAADDD DEDDYEEPGG GNRLLGFMFG NVDDAGGLDA DYLDEDAKDH LFALADKLGP SLKDMDLTKS SSVPDDPSEQ DYDEKAEDAI
0101: DYEDIDEQYD GPEVEAATEE DHLLSKKDYL SSNTMFALVC SKVSVFDEEN YDEDEEPPND IELPGDYSIQ AEQLGISPSN DNPAIETVSS SLTQLGESMD
0201: VEYEVCQQEE IDIEEDQLES KCATSLPVLC MEHGSAILKF SEVFGVQEPV RKAKTDHHKR PVSKDVRITN ISDIVEDDEE VFLRCAIQDV SSLKHIKMNE
0301: DFVESDSDEL ISSDTFGFKG SCLSEQPMKE AHKDFPTAQQ APVCPDVYPL EHEDWENGII WGNSPASESR SCLESCVISE ESSDTHSEDE ANDYGYVSRY
0401: CDVQSRNNDS PEPFGYTEMP ASASYHSPEN SYPPLTKETS PEKNDLDHAE PNNINGTVKI VTMKCLSNLS LLNKELLEGS WLDNIIWDHS EDAPKPKLIM
0501: DLKDDQMLFE ILDEENGDHL RSHAFAMIVS GSVRTSTVEN FGRNNQIVTV DGQFNISNDE FYSNKEISQQ AKSHTKKRSS MGVKVVHSVP AQKLQTMKLN
0601: LSINEIANFH RPKAKWYPHE NKLAVELQGA ACSHGSMTVI VMTLGGKAVK LLVNAEETPL SVKSKASKKL EFRPSEKIKL FGSGKELQDG ISLAMQNVRP
0701: NSILHVVRTE VHLWPKAQRL PGKDKALRPP GAFRKRSDLS LKDGHVFLME YCEERPLLLA NAGMGARLCT YYQKTSPDDQ TATSLRSNND GLGTVLAIEP
0801: ADKSPFLGDV RSGSHQSCLE TNMYRAPAFP HKVASTDYLL VRSPKGMLSL RRIDKLYAVG QQEPHMEVFS PRPKSLQNYL LNRILVYVYR EFRARERPGV
0901: LSQIRADEIP IEHPLTEVIV RKGLKHCADL EKGPNGHLFW TQRADFRIPS EDELRRLLSP ESVCCHESMQ AAQHRLKHLG IHKLTQPVGL ASAMDQLPDK
1001: AIELAAAAHI ERELQITSWN LTSNFVACMN QDRENIERLE ISGIGDPSGR GLGFSYVRVN PVSNLPHKKK PAAAKGTTVT GTDADLRRLS MDAARELLLK
1101: FGVPEEQIDK LTRWHRIAMV RKLSSEQAAS GIMIDEIPVS KFARGQRMSF LQLQHQAKEK CQEIWDRQFQ SLSAIDGDDN GSDTEANSDF DSFAGDLENL
1201: LDAEEFDNED VGNADLSSDK GNDMEGLKMR KFSTRVQFNE EDDQAEAALI KKLLEESGND IKGKKQPVEM TNYGTSMYNQ GANKTKPRQS ALTLEESTPG
1301: GVKEEKRQGA KGDQQTLCLV CGACGKLGHM RTNKLCPKYG QDPETSGLDV ISYRSNPLDE ASHVQTTKPP GRRLVAKVSS EVPETEGPDC IEKIKPVKFR
1401: CGAPEKSLER NMSVAGSLVS DKLTMDANDL RSTGNVSKIK ICSKTKSEDY PPDTPKPSIV IRLRAKAEKD VPRKKVIFKQ PEGHVGQLTA IENRSGQEPR
1501: KLRKIAELPS FKENSRENDG WYAGEPSQMN SSQDRLGLDG IRKSKIVGSD ESWSAFKEQR VRQEQRLIQA RMQEVSREEE LQKSKRKNKK KKRHEFRDDD
1601: VLDHRPYRND RRVPERDRAT KRRTPADMTE YAPSAKRRRG GEVELSNILE KIVDHLRNQT SISLLFLKPV TKKVAPDYHD IIQRPMDLGT IRDKARKMEY
1701: RNREELRRDV AQIATNAHIY NDTRNPHIPP LADQLLKSCN CLLEESADAL DDAESAIEGL AQ
0101: DYEDIDEQYD GPEVEAATEE DHLLSKKDYL SSNTMFALVC SKVSVFDEEN YDEDEEPPND IELPGDYSIQ AEQLGISPSN DNPAIETVSS SLTQLGESMD
0201: VEYEVCQQEE IDIEEDQLES KCATSLPVLC MEHGSAILKF SEVFGVQEPV RKAKTDHHKR PVSKDVRITN ISDIVEDDEE VFLRCAIQDV SSLKHIKMNE
0301: DFVESDSDEL ISSDTFGFKG SCLSEQPMKE AHKDFPTAQQ APVCPDVYPL EHEDWENGII WGNSPASESR SCLESCVISE ESSDTHSEDE ANDYGYVSRY
0401: CDVQSRNNDS PEPFGYTEMP ASASYHSPEN SYPPLTKETS PEKNDLDHAE PNNINGTVKI VTMKCLSNLS LLNKELLEGS WLDNIIWDHS EDAPKPKLIM
0501: DLKDDQMLFE ILDEENGDHL RSHAFAMIVS GSVRTSTVEN FGRNNQIVTV DGQFNISNDE FYSNKEISQQ AKSHTKKRSS MGVKVVHSVP AQKLQTMKLN
0601: LSINEIANFH RPKAKWYPHE NKLAVELQGA ACSHGSMTVI VMTLGGKAVK LLVNAEETPL SVKSKASKKL EFRPSEKIKL FGSGKELQDG ISLAMQNVRP
0701: NSILHVVRTE VHLWPKAQRL PGKDKALRPP GAFRKRSDLS LKDGHVFLME YCEERPLLLA NAGMGARLCT YYQKTSPDDQ TATSLRSNND GLGTVLAIEP
0801: ADKSPFLGDV RSGSHQSCLE TNMYRAPAFP HKVASTDYLL VRSPKGMLSL RRIDKLYAVG QQEPHMEVFS PRPKSLQNYL LNRILVYVYR EFRARERPGV
0901: LSQIRADEIP IEHPLTEVIV RKGLKHCADL EKGPNGHLFW TQRADFRIPS EDELRRLLSP ESVCCHESMQ AAQHRLKHLG IHKLTQPVGL ASAMDQLPDK
1001: AIELAAAAHI ERELQITSWN LTSNFVACMN QDRENIERLE ISGIGDPSGR GLGFSYVRVN PVSNLPHKKK PAAAKGTTVT GTDADLRRLS MDAARELLLK
1101: FGVPEEQIDK LTRWHRIAMV RKLSSEQAAS GIMIDEIPVS KFARGQRMSF LQLQHQAKEK CQEIWDRQFQ SLSAIDGDDN GSDTEANSDF DSFAGDLENL
1201: LDAEEFDNED VGNADLSSDK GNDMEGLKMR KFSTRVQFNE EDDQAEAALI KKLLEESGND IKGKKQPVEM TNYGTSMYNQ GANKTKPRQS ALTLEESTPG
1301: GVKEEKRQGA KGDQQTLCLV CGACGKLGHM RTNKLCPKYG QDPETSGLDV ISYRSNPLDE ASHVQTTKPP GRRLVAKVSS EVPETEGPDC IEKIKPVKFR
1401: CGAPEKSLER NMSVAGSLVS DKLTMDANDL RSTGNVSKIK ICSKTKSEDY PPDTPKPSIV IRLRAKAEKD VPRKKVIFKQ PEGHVGQLTA IENRSGQEPR
1501: KLRKIAELPS FKENSRENDG WYAGEPSQMN SSQDRLGLDG IRKSKIVGSD ESWSAFKEQR VRQEQRLIQA RMQEVSREEE LQKSKRKNKK KKRHEFRDDD
1601: VLDHRPYRND RRVPERDRAT KRRTPADMTE YAPSAKRRRG GEVELSNILE KIVDHLRNQT SISLLFLKPV TKKVAPDYHD IIQRPMDLGT IRDKARKMEY
1701: RNREELRRDV AQIATNAHIY NDTRNPHIPP LADQLLKSCN CLLEESADAL DDAESAIEGL AQ
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.