Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G317800.1 | Wheat | nucleus | 99.39 | 99.39 |
| TraesCS5D01G324200.2 | Wheat | nucleus | 99.09 | 99.09 |
| HORVU7Hr1G113760.2 | Barley | nucleus | 97.87 | 97.87 |
| HORVU0Hr1G022460.1 | Barley | nucleus | 72.87 | 97.75 |
| TraesCS7B01G416400.1 | Wheat | nucleus | 72.41 | 97.14 |
| Zm00001d044810_P001 | Maize | nucleus | 17.68 | 89.92 |
| Os06t0649500-01 | Rice | nucleus | 87.65 | 87.92 |
| KXG20501 | Sorghum | nucleus | 87.65 | 87.52 |
| Zm00001d046810_P002 | Maize | nucleus | 87.8 | 85.59 |
| GSMUA_Achr9P22400_001 | Banana | cytosol | 21.49 | 82.46 |
| Zm00001d053142_P001 | Maize | nucleus | 19.82 | 80.75 |
| Zm00001d025112_P001 | Maize | cytosol, nucleus, plastid | 21.34 | 76.5 |
| VIT_04s0008g05780.t01 | Wine grape | nucleus | 74.09 | 71.89 |
| Zm00001d016330_P001 | Maize | extracellular | 15.55 | 70.34 |
| KRH52333 | Soybean | nucleus | 70.27 | 69.53 |
| KRH61671 | Soybean | nucleus | 70.58 | 69.21 |
| AT5G25150.1 | Thale cress | nucleus | 69.51 | 68.16 |
| Bra036534.1-P | Field mustard | nucleus | 69.05 | 67.81 |
| CDY19814 | Canola | nucleus | 69.05 | 67.81 |
| CDX87098 | Canola | nucleus | 68.45 | 67.22 |
| Solyc06g065700.2.1 | Tomato | nucleus | 69.97 | 67.01 |
| GSMUA_Achr9P22410_001 | Banana | cytosol | 37.65 | 66.22 |
| KRH05348 | Soybean | nucleus | 65.85 | 65.65 |
| CDY05473 | Canola | nucleus | 66.62 | 65.62 |
| Bra020485.1-P | Field mustard | nucleus | 66.16 | 65.17 |
| CDY05378 | Canola | nucleus | 65.85 | 65.06 |
| KRG99418 | Soybean | cytosol, extracellular, plastid | 8.54 | 64.37 |
| GSMUA_Achr7P26980_001 | Banana | nucleus | 74.09 | 63.61 |
| KRH15679 | Soybean | cytosol | 10.06 | 51.97 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 12.35 | 25.16 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 11.43 | 21.43 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 11.43 | 21.43 |
| TraesCS2B01G201600.1 | Wheat | cytosol, nucleus, plastid | 16.31 | 20.86 |
| TraesCS4B01G163800.1 | Wheat | cytosol, nucleus, plastid | 16.01 | 20.63 |
| TraesCS2B01G255700.1 | Wheat | nucleus | 15.4 | 18.1 |
| TraesCS2B01G468100.1 | Wheat | nucleus | 19.05 | 14.09 |
| TraesCS7B01G423400.1 | Wheat | nucleus | 18.9 | 14.09 |
| TraesCS4B01G317800.1 | Wheat | nucleus | 15.85 | 11.06 |
Protein Annotations
| Gene3D:1.25.40.500 | MapMan:15.3.4.3.1 | MapMan:15.3.5.3.5 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| InterPro:IPR037264 | PFAM:PF00400 | PFAM:PF04494 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19879 | SMART:SM00320 | SUPFAM:SSF160897 | SUPFAM:SSF50978 | InterPro:TFIID_NTD2 |
| InterPro:TFIID_NTD2_sf | EnsemblPlantsGene:TraesCS5B01G318400 | EnsemblPlants:TraesCS5B01G318400.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | TIGR:cd08044 | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:-:502501258..502508421
Molecular Weight (calculated)
73271.8 Da
IEP (calculated)
6.694
GRAVY (calculated)
-0.402
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEMERKV QQYLHRKGFR LTELALQEER NRLSTTSLSD VSLSRPDNDP ARYYDGYNKL RSWAYNSLDQ YKHELLRVLY PAFIHCFMDL VSEGHTLEAR
101: AFFLKFREDH ELMHSRDLQK LEGTLSPLHL EEMDLARSLR ENKFRIKLCE YSYELLLQYL QKTQALVMLG IINERIIFEV SAGQPSLISD DADVVALVGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL LDSDRAEAES KDADAEDNNK KKSSEGGKQG GPLNKKLKKD KLVGATGKNT KSETSMISAA PRVKPELTLP
301: ATPVEVEQSI LEDLRNRAQL NNLALPSVSF YTFLNTHNGL NCSSISNDGS LVVGGFSDSS VKVWDMAKIG QPAKTSSSQG ENGSSQDERL SSTSEGKRPY
401: TLFQGHSGPV YSAAFSPFGD FLLSSSSDST IRLWSTKLNA NLVCYKGHNY PVWDVQFSPV GHYFASASHD RTARIWSMDR IQPLRIMAGH LADVDCVHWH
501: VNCNYIATGS SDKTVRLWDV QTGECIRMFI GHRSMVLSLA MSPDGRYMAS GDEDGTIMMW DLSTGRCVSP LAGHNSCVWS LAFSCEGALL ASGSADCTVK
601: LWDVASSTKA LKMDDTKAGS TNRLRLLKAL PTKSTPVYNL RFSWRNLLFA SGALSL
101: AFFLKFREDH ELMHSRDLQK LEGTLSPLHL EEMDLARSLR ENKFRIKLCE YSYELLLQYL QKTQALVMLG IINERIIFEV SAGQPSLISD DADVVALVGT
201: SKDLAKQINQ KEVHWGLLED SVEERMEKAL LDSDRAEAES KDADAEDNNK KKSSEGGKQG GPLNKKLKKD KLVGATGKNT KSETSMISAA PRVKPELTLP
301: ATPVEVEQSI LEDLRNRAQL NNLALPSVSF YTFLNTHNGL NCSSISNDGS LVVGGFSDSS VKVWDMAKIG QPAKTSSSQG ENGSSQDERL SSTSEGKRPY
401: TLFQGHSGPV YSAAFSPFGD FLLSSSSDST IRLWSTKLNA NLVCYKGHNY PVWDVQFSPV GHYFASASHD RTARIWSMDR IQPLRIMAGH LADVDCVHWH
501: VNCNYIATGS SDKTVRLWDV QTGECIRMFI GHRSMVLSLA MSPDGRYMAS GDEDGTIMMW DLSTGRCVSP LAGHNSCVWS LAFSCEGALL ASGSADCTVK
601: LWDVASSTKA LKMDDTKAGS TNRLRLLKAL PTKSTPVYNL RFSWRNLLFA SGALSL
001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN
Arabidopsis Description
TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.