Factsheet for TraesCS7B01G346100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G047900.1
TraesCS5A01G387500.1
TraesCS5B01G053000.1
TraesCS5B01G392600.1
TraesCS5D01G397400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	TraesCS5A01G047900.1	AT4G16440.1	23104832
AT2G26060.1	TraesCS5A01G387500.1	AT4G16440.1	23104832
AT2G26060.1	TraesCS5B01G053000.1	AT4G16440.1	23104832
AT2G26060.1	TraesCS5B01G392600.1	AT4G16440.1	23104832
AT2G26060.1	TraesCS5D01G397400.1	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G446400.2	Wheat	cytosol	94.29	95.1
TraesCS7D01G435500.1	Wheat	cytosol	94.29	94.56
HORVU7Hr1G101230.1	Barley	cytosol	83.71	86.69
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	86.0	86.0
Zm00001d019299_P001	Maize	cytosol	78.86	79.08
Os07t0252000-01	Rice	cytosol	79.71	79.04
EER98280	Sorghum	cytosol, nucleus, plastid	77.71	78.84
GSMUA_Achr5P26190_001	Banana	cytosol	63.43	63.79
VIT_08s0007g03360.t01	Wine grape	cytosol	62.0	63.08
CDX76728	Canola	cytosol	61.43	62.14
CDY11502	Canola	cytosol	61.14	61.85
Bra007771.1-P	Field mustard	cytosol	60.86	61.56
KRH67917	Soybean	cytosol	60.0	61.22
Solyc09g074400.2.1	Tomato	cytosol	61.14	60.97
AT2G26060.1	Thale cress	cytosol	60.29	59.94
PGSC0003DMT400043378	Potato	cytosol	46.0	59.19
AT4G32990.1	Thale cress	cytosol	52.29	55.79
KRH33352	Soybean	plastid	30.0	41.34
Solyc09g009410.2.1	Tomato	cytosol, nucleus	40.86	41.09
CDY41854	Canola	cytosol	53.71	34.56
CDX77335	Canola	cytosol	34.0	28.2
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	47.71	26.38
TraesCS4B01G144300.1	Wheat	cytosol	15.14	16.46
TraesCS7B01G416400.1	Wheat	nucleus	20.86	14.93
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	21.14	14.43
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	20.86	14.34
TraesCS2B01G255700.1	Wheat	nucleus	22.0	13.8
TraesCS5B01G318400.1	Wheat	nucleus	21.43	11.43
TraesCS4B01G317800.1	Wheat	nucleus	20.86	7.77
TraesCS7B01G423400.1	Wheat	nucleus	19.43	7.73
TraesCS2B01G468100.1	Wheat	nucleus	19.14	7.55

Protein Annotations

Gene3D:2.130.10.10	MapMan:7.11.3.2.1	InterPro:CIAO1/Cia1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
GO:GO:0097361	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	HAMAP:MF_03037	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19920	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS7B01G346100	EnsemblPlants:TraesCS7B01G346100.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	:	:	:

Description

No Description!

Coordinates

chr7B:+:602087939..602091924

Molecular Weight (calculated)

38672.8 Da

IEP (calculated)

4.585

GRAVY (calculated)

-0.359

Length

350 amino acids

Sequence
(BLAST)

001: MDRGGSAELR ETHRLVGHAD RAWALAWSPN PGAGAGPVLA SCGADKTVRI WKRAPDGAWH CSDVLEGVHE RTVRSCAWSP DGKLLVDASF DGTAAIWEYS
101: GEDFELVDTL EGHLNEVKSV SWNQSGSMIA TCSRDRAAWI WEILPGNEHE CVDVLEGHTE DVKMVQWHPF FDVLVSVSYD NTIRVWADDG DGKWPCVQTL
201: TEAGNSGHSS TVWSISFNQK GDRMVTCSDD CTLKIWDTSI DLSQPTIGEG HDSWRHISTL SGYHGRTIFS VHWSSEDVIA SGAGDNAICL FAEENSMVEG
301: PSYRLILKKE KAHDMDVNCV RWCPQDPRVL ASASDDGTVK LWELRGDILD

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.