Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400065476 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | PGSC0003DMT400065476 | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074400.2.1 | Tomato | cytosol | 95.22 | 73.79 |
| KRH67917 | Soybean | cytosol | 76.84 | 60.93 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 76.84 | 60.76 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 71.32 | 55.75 |
| AT2G26060.1 | Thale cress | cytosol | 70.96 | 54.83 |
| KRH33352 | Soybean | plastid | 51.1 | 54.72 |
| CDX76728 | Canola | cytosol | 69.12 | 54.34 |
| CDY11502 | Canola | cytosol | 68.01 | 53.47 |
| Bra007771.1-P | Field mustard | cytosol | 68.01 | 53.47 |
| Zm00001d019299_P001 | Maize | cytosol | 65.44 | 51.0 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 63.24 | 50.89 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 62.87 | 49.57 |
| Os07t0252000-01 | Rice | cytosol | 63.97 | 49.29 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 62.87 | 48.86 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 62.87 | 48.86 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 62.87 | 48.86 |
| AT4G32990.1 | Thale cress | cytosol | 57.35 | 47.56 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 59.19 | 46.0 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 58.82 | 45.85 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 57.35 | 44.96 |
| CDY41854 | Canola | cytosol | 61.4 | 30.7 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 56.25 | 24.17 |
| PGSC0003DMT400009959 | Potato | cytosol | 12.13 | 23.91 |
| CDX77335 | Canola | cytosol | 31.99 | 20.62 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 25.0 | 19.26 |
| PGSC0003DMT400041481 | Potato | cytosol | 21.69 | 18.27 |
| PGSC0003DMT400000871 | Potato | cytosol | 21.69 | 18.27 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 27.21 | 15.38 |
| PGSC0003DMT400093026 | Potato | cytosol | 27.94 | 14.87 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 20.96 | 9.78 |
| PGSC0003DMT400034226 | Potato | cytosol | 8.82 | 9.56 |
| PGSC0003DMT400066026 | Potato | nucleus | 21.69 | 6.21 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 20.96 | 6.07 |
| PGSC0003DMT400039889 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | InterPro:CIAO1/Cia1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 | GO:GO:0097361 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1BEI3 | HAMAP:MF_03037 | PFAM:PF00400 |
| EnsemblPlantsGene:PGSC0003DMG400016841 | PGSC:PGSC0003DMG400016841 | EnsemblPlants:PGSC0003DMT400043378 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19920 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002951302 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016841]
Coordinates
chr9:-:51660152..51667714
Molecular Weight (calculated)
30614.2 Da
IEP (calculated)
4.510
GRAVY (calculated)
-0.424
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEDEDYEL REIQKLEGHT DKVWSVAWKP ATGINGIPAV FASCSGDKTV RIWEENSTGS FQCQAVLEET HTRTVRSCAW SPSGKFLATA SFDATTAIWE
101: NVGVDFECVS TLEGHDNEVK SVSWNNSGSL LATCGRDKSV WIWEVLPGNE FDCVSVLQGH TQDVKMVQWN PSMDTLFSCS YDNTIKVWVE NGDSDDWHCI
201: QTLGESNSGH TSTVWSLTFN ASGDKMVSCS DDLTIKVWTS KMQEWDQNAP WKHVCTLSGY HDRTIFSVHW SR
101: NVGVDFECVS TLEGHDNEVK SVSWNNSGSL LATCGRDKSV WIWEVLPGNE FDCVSVLQGH TQDVKMVQWN PSMDTLFSCS YDNTIKVWVE NGDSDDWHCI
201: QTLGESNSGH TSTVWSLTFN ASGDKMVSCS DDLTIKVWTS KMQEWDQNAP WKHVCTLSGY HDRTIFSVHW SR
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.