Factsheet for PGSC0003DMT400039889

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34790_001	Banana	extracellular	65.52	24.36
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	87.93	14.45
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.21	13.51
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.93	12.17
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	94.83	11.43
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.93	10.22
PGSC0003DMT400093026	Potato	cytosol	72.41	8.22
Zm00001d025048_P003	Maize	cytosol	68.97	7.13
Os07t0405100-01	Rice	cytosol	67.24	7.03
KRH61363	Soybean	nucleus	67.24	6.87
TraesCS2D01G235100.1	Wheat	nucleus	65.52	6.83
TraesCS2B01G255700.1	Wheat	nucleus	65.52	6.81
TraesCS2A01G227200.3	Wheat	cytosol	65.52	6.8
HORVU2Hr1G053480.9	Barley	mitochondrion	65.52	6.79
EES11818	Sorghum	nucleus, plastid	68.97	6.64
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	65.52	6.35
KRH52050	Soybean	cytosol, nucleus, peroxisome	67.24	6.1
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	22.41	2.23
PGSC0003DMT400041481	Potato	cytosol	8.62	1.55
PGSC0003DMT400000871	Potato	cytosol	8.62	1.55
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	20.69	1.28
PGSC0003DMT400034226	Potato	cytosol	5.17	1.2
PGSC0003DMT400066026	Potato	nucleus	18.97	1.16
PGSC0003DMT400043378	Potato	cytosol	0.0	0.0
PGSC0003DMT400009959	Potato	cytosol	0.0	0.0
GSMUA_Achr6P34780_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400039889	EnsemblPlantsGene:PGSC0003DMG400015429	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	PFscan:PS50082	PFscan:PS50294	PGSC:PGSC0003DMG400015429
SUPFAM:SSF50978	UniParc:UPI000295755B	UniProt:M1B8X8	MapMan:35.1	:	:

Description

Polyadenylation factor subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400015429]

Coordinates

chr12:-:56353754..56354101

Molecular Weight (calculated)

6493.9 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.040

Length

58 amino acids

Sequence
(BLAST)

1: MASGSLDKCM NIWSVKEAKI VKTYNGDGCI FEVCWNKEGN KVAACFANKK VCVYDLRL

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.