CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
endoplasmic reticulum 1
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025048_P003	Maize	cytosol	90.2	96.79
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	90.37	90.97
Os07t0405100-01	Rice	cytosol	83.55	90.63
TraesCS2D01G235100.1	Wheat	nucleus	82.23	89.03
TraesCS2B01G255700.1	Wheat	nucleus	82.39	88.89
TraesCS2A01G227200.3	Wheat	cytosol	82.06	88.37
HORVU2Hr1G053480.9	Barley	mitochondrion	79.24	85.18
KRH04500	Soybean	cytosol	36.88	79.29
GSMUA_Achr6P34780_001	Banana	cytosol	53.99	69.3
PGSC0003DMT400039889	Potato	cytosol	6.64	68.97
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	40.03	68.27
CDY57442	Canola	cytosol	24.58	67.27
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.03	66.76
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.32	66.74
Solyc04g078320.2.1	Tomato	cytosol	65.45	66.55
KRH04498	Soybean	mitochondrion	28.74	66.28
KRH28415	Soybean	nucleus	60.96	65.77
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.65	64.73
VIT_07s0129g00690.t01	Wine grape	nucleus	64.12	64.66
KRH61363	Soybean	nucleus	60.8	64.44
PGSC0003DMT400093026	Potato	cytosol	53.99	63.6
Solyc12g049100.1.1	Tomato	cytosol	37.21	63.46
Solyc12g088630.1.1	Tomato	cytosol	53.49	63.01
Solyc12g088620.1.1	Tomato	cytosol	54.15	62.45
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.86	61.58
KRH58014	Soybean	nucleus	63.12	60.9
CDY18648	Canola	cytosol	57.14	60.14
AT5G67320.1	Thale cress	cytosol	59.47	58.4
Solyc12g088570.1.1	Tomato	cytosol	35.05	57.97
KRH52050	Soybean	cytosol, nucleus, peroxisome	61.46	57.9
Bra037118.1-P	Field mustard	cytosol	58.31	57.35
CDX81324	Canola	cytosol	58.47	57.33
KRH04503	Soybean	nucleus	26.58	47.9
VIT_18s0001g09600.t01	Wine grape	cytosol	35.22	38.76
CDY57444	Canola	cytosol, mitochondrion	18.44	38.28
EER98280	Sorghum	cytosol, nucleus, plastid	12.96	22.61
KXG23186	Sorghum	plastid	8.47	20.9
EES08930	Sorghum	cytosol	10.96	20.5
EER94850	Sorghum	plastid	15.95	18.46
KXG20501	Sorghum	nucleus	17.11	15.68
EES12762	Sorghum	cytosol	13.79	9.36
EER95491	Sorghum	nucleus	13.95	8.96
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	2.66	8.89
OQU89577	Sorghum	plastid	2.82	7.98
OQU91217	Sorghum	plastid	3.16	7.72
OQU76815	Sorghum	plastid	2.49	7.11
OQU84751	Sorghum	plastid	2.33	6.9

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	EntrezGene:8066023	UniProt:C5YCA7	ncoils:Coil
EnsemblPlants:EES11818	ProteinID:EES11818	ProteinID:EES11818.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118	GO:GO:0003674
GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987
GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2
SMART:SM00320	SMART:SM00667	EnsemblPlantsGene:SORBI_3006G019300	SUPFAM:SSF50978	unigene:Sbi.13088	UniParc:UPI0001A87259
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002447490.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3311087..3324205

Molecular Weight (calculated)

67435.8 Da

IEP (calculated)

6.215

GRAVY (calculated)

-0.701

Length

602 amino acids

Sequence
(BLAST)

001: MTHSHPSQRH TTTSHAAVLA LAAPSLPVPS AAPTAPSPPP AMGVLTSTEL NFLVFRYLQE SGFIHAAFTL GYEAGIHKGG IDGNAVPPGA LITIVQKGLQ
101: YIELEANNDE NDDEVERDFA LLEPLEIITK DVEELQQIVK KRKLERSQTE HEKDKGKEKE RNEEHERRPV GERERERHDK EKEQVREKDR SEKDKDHDKE
201: KEKEKERERQ HAERIDKVKH EDDSLAGGGP TPMDVSTTAQ EISNTDVTVL EGHSSEVFAC AWSPTGSLLA SGSGDSTARI WTIPDGPCGS NMQSSPPGVH
301: VLKHFKGRTN EKSKDVTTLD WNGEGTLLAT GSYDGQARIW SRDGDLKQTL FKHKGPIFSL KWNKKGDFLL SGSVDKTAIV WDTKTWECKQ QFEFHSAPTL
401: DVDWRNNNSF ATCSTDNMIY VCKIGEQRPV KTFSGHQNEV NAIKWDPTGS FLASCSDDWT AKIWSMKQDK CLFDFKEHTK EIYTIRWSPT GPGTNNPNQQ
501: LLLASASFDS TIKLWEVEHG RLLYSLSGHR QPVYSVAFSP DGEYLASGSL DQCLHIWSVK EGRILKTYRG SGGIFEVCWN KEGSKIAACF SNNTVCVMDF
601: RM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.