Factsheet for Solyc12g088540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, golgi, plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
plastid 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.53	89.73
PGSC0003DMT400039889	Potato	cytosol	10.22	87.93
Solyc12g088570.1.1	Tomato	cytosol	62.93	86.26
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.34	86.16
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.96	85.03
Solyc12g088620.1.1	Tomato	cytosol	84.37	80.65
Solyc12g088630.1.1	Tomato	cytosol	71.34	69.67
Solyc12g049100.1.1	Tomato	cytosol	47.9	67.71
Solyc04g078320.2.1	Tomato	cytosol	71.94	60.64
Os07t0405100-01	Rice	cytosol	64.13	57.66
Zm00001d025048_P003	Maize	cytosol	64.53	57.4
TraesCS2B01G255700.1	Wheat	nucleus	62.73	56.09
TraesCS2A01G227200.3	Wheat	cytosol	62.73	55.99
TraesCS2D01G235100.1	Wheat	nucleus	62.32	55.94
KRH61363	Soybean	nucleus	62.73	55.11
GSMUA_Achr6P34780_001	Banana	cytosol	50.9	54.16
HORVU2Hr1G053480.9	Barley	mitochondrion	60.32	53.75
EES11818	Sorghum	nucleus, plastid	64.73	53.65
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	63.13	52.68
GSMUA_Achr6P34790_001	Banana	extracellular	15.83	50.64
KRH52050	Soybean	cytosol, nucleus, peroxisome	62.93	49.14
Solyc09g074400.2.1	Tomato	cytosol	17.43	24.79
Solyc07g041080.2.1	Tomato	cytosol, nucleus	13.83	21.36
Solyc09g009410.2.1	Tomato	cytosol, nucleus	14.43	20.69
Solyc12g009030.1.1	Tomato	cytosol, nucleus	13.23	20.43
Solyc04g016510.2.1	Tomato	nucleus	17.23	17.62
Solyc06g065700.2.1	Tomato	nucleus	19.64	14.31
Solyc10g039190.1.1	Tomato	nucleus	19.24	10.11
Solyc03g097160.2.1	Tomato	nucleus	17.23	9.87

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118
GO:GO:0003674	GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4DGS5	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc12g088540.1	EnsemblPlants:Solyc12g088540.1.1	UniParc:UPI000276AB5E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:63856899..63862070

Molecular Weight (calculated)

56010.1 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.485

Length

499 amino acids

Sequence
(BLAST)

001: MAFLTSEFLN FIVFRYLFES GFTHAAFNFG YEAGLNTSTI NGHLVPPGGL VQLVQKGIMY LELETNFSND DTDMNEDFKL LEPMDLITKS VDELRKIIKE
101: KKEKAQKKKL RGKGKANADH KREPTRRTEM EKQHKEKELE HDSERSDVMV LEGHTSEVFA CAWSPEGSLL ASGSGDATAR IWTIGDGPFN YTIPNVLVLN
201: HLDSQATEEN KDVTSLDWNR EGTLLATGSY DGQARIWKRS GKLASTLNKH EGPIMSLKWN KKGNYLLSGS IDTTAIVWDV KSGESKQQFG FHSGQLLDVA
301: WRNNDSFATS SADSMIYVCK VGENKPVKKF SGHQNEINAI DWDPLGSLLA SCSDDTTVKI WSMKQDVCLH DFREHSKEIY TIKWSPTGAG TSNPNQQLLL
401: ASASFDTTVK LWDVHQGRLL HSFNSHREPI YSIAFSPNGE YLASGSLDKC MNIWSVKEAK LVRTYNGDGG IFEVCWNKKG NKVAACFANK KVYVFDLRL

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.