Factsheet for Solyc12g088630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093026	Potato	cytosol	86.5	86.5
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.67	71.34
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.49	69.73
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.16	68.5
Solyc12g088620.1.1	Tomato	cytosol	68.88	67.43
Solyc12g049100.1.1	Tomato	cytosol	44.81	64.87
Solyc12g088570.1.1	Tomato	cytosol	44.62	62.64
Solyc04g078320.2.1	Tomato	cytosol	70.65	60.98
Os07t0405100-01	Rice	cytosol	62.62	57.66
Zm00001d025048_P003	Maize	cytosol	62.62	57.04
TraesCS2A01G227200.3	Wheat	cytosol	60.86	55.64
TraesCS2D01G235100.1	Wheat	nucleus	60.47	55.58
TraesCS2B01G255700.1	Wheat	nucleus	60.67	55.56
KRH61363	Soybean	nucleus	60.27	54.23
EES11818	Sorghum	nucleus, plastid	63.01	53.49
GSMUA_Achr6P34780_001	Banana	cytosol	48.53	52.88
HORVU2Hr1G053480.9	Barley	mitochondrion	57.93	52.86
GSMUA_Achr6P34790_001	Banana	extracellular	16.05	52.56
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	60.86	52.01
KRH52050	Soybean	cytosol, nucleus, peroxisome	60.67	48.51
Solyc09g074400.2.1	Tomato	cytosol	17.03	24.79
Solyc07g041080.2.1	Tomato	cytosol, nucleus	13.5	21.36
Solyc12g009030.1.1	Tomato	cytosol, nucleus	13.31	21.05
Solyc09g009410.2.1	Tomato	cytosol, nucleus	13.7	20.11
Solyc04g016510.2.1	Tomato	nucleus	17.03	17.83
Solyc06g065700.2.1	Tomato	nucleus	19.77	14.74
Solyc10g039190.1.1	Tomato	nucleus	18.59	10.0
Solyc03g097160.2.1	Tomato	nucleus	16.44	9.64

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000118
GO:GO:0003674	GO:GO:0003714	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006357	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4DGT4	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320
SMART:SM00667	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc12g088630.1	EnsemblPlants:Solyc12g088630.1.1	UniParc:UPI000276944F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

No Description!

Coordinates

chr12:+:63908014..63912713

Molecular Weight (calculated)

57056.0 Da

IEP (calculated)

6.002

GRAVY (calculated)

-0.439

Length

511 amino acids

Sequence
(BLAST)

001: MASLTSDLLN FIVFRYLQES GFIHAAFSFG YEAGLNRSSI DGRLIPINAL IKIVQKGLQY LELETNLSID DTDMDEDFRF VEPFDLITKS VSELQQMIKE
101: EKEKVRKDKA NADNELDHER EPARDSEKEK NGNDGDLEPM DICTDSTSLP CEISSCDVRA LEGHTSEVFV CAWSPEGSLL ASGSGDSTAR IWTIGDGSGN
201: PTMQRMPPNV MVLKHLDSRA TEENNDVTTL DWNRKGTLLA TGSYDGQARI WTRSGSLFQT LNKHEGTIFS VKWNKKGDYL LSGSTDRTAV VWNVKSGELK
301: QQFCFNAGFL DADWLDNNSF AIGSTDNKVY ICKVGVNQPV KRFSGHKNAI NAIKWDPSGS LLASCSEDTT VKIWSMKRDV CLHNFREHSK EINTVRWSPT
401: GAGTSNPNKK LLLASASFDS TVKLWDIERG RLLHSLNGHR EVVYSVAFSP NGDYLASGSL DKRMNIWSVK EAKIVKTYHT DGGIFNVCWN KEGNKVAACF
501: SNKVFVFDIR S

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.