Factsheet for Solyc09g009410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g065990.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	Solyc08g065990.2.1	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074400.2.1	Tomato	cytosol	55.75	55.27
VIT_08s0007g03360.t01	Wine grape	cytosol	50.0	50.58
KRH67917	Soybean	cytosol	48.85	49.56
GSMUA_Achr5P26190_001	Banana	cytosol	47.99	47.99
CDX76728	Canola	cytosol	47.41	47.69
CDY11502	Canola	cytosol	46.26	46.53
Bra007771.1-P	Field mustard	cytosol	45.98	46.24
AT2G26060.1	Thale cress	cytosol	46.55	46.02
EER98280	Sorghum	cytosol, nucleus, plastid	44.54	44.93
Zm00001d019299_P001	Maize	cytosol	44.25	44.13
Os07t0252000-01	Rice	cytosol	43.68	43.06
HORVU7Hr1G101230.1	Barley	cytosol	41.67	42.9
TraesCS7D01G435400.1	Wheat	cytosol	43.1	42.86
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	43.1	42.86
TraesCS7A01G446500.1	Wheat	cytosol	42.82	42.57
TraesCS7D01G435500.1	Wheat	cytosol	41.67	41.55
TraesCS7A01G446400.2	Wheat	cytosol	41.38	41.5
AT4G32990.1	Thale cress	cytosol	39.08	41.46
TraesCS7B01G346100.1	Wheat	cytosol	41.09	40.86
KRH33352	Soybean	plastid	26.72	36.61
CDY41854	Canola	cytosol	40.8	26.1
CDX77335	Canola	cytosol	27.3	22.51
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	36.78	20.22
Solyc12g049100.1.1	Tomato	cytosol	17.53	17.28
Solyc07g041080.2.1	Tomato	cytosol, nucleus	15.8	17.03
Solyc12g009030.1.1	Tomato	cytosol, nucleus	15.52	16.72
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.8	14.86
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.69	14.43
Solyc12g088570.1.1	Tomato	cytosol	14.94	14.29
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.95	14.08
Solyc12g088630.1.1	Tomato	cytosol	20.11	13.7
Solyc12g088620.1.1	Tomato	cytosol	19.83	13.22
Solyc04g078320.2.1	Tomato	cytosol	21.55	12.67
Solyc04g016510.2.1	Tomato	nucleus	16.38	11.68
Solyc06g065700.2.1	Tomato	nucleus	16.38	8.32
Solyc10g039190.1.1	Tomato	nucleus	17.82	6.53
Solyc03g097160.2.1	Tomato	nucleus	15.52	6.2

Protein Annotations

Gene3D:2.130.10.10	MapMan:7.11.3.2.1	InterPro:CIAO1/Cia1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
GO:GO:0097361	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CQX0	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19920	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc09g009410.2	EnsemblPlants:Solyc09g009410.2.1	UniParc:UPI000276C6CA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr9:+:2848575..2854320

Molecular Weight (calculated)

39467.1 Da

IEP (calculated)

4.586

GRAVY (calculated)

-0.364

Length

348 amino acids

Sequence
(BLAST)

001: MKNFSYDDFE LKEIQKLGKV LGIAWKVDTG VSGFLAVMAS WSDDKTIRIW EENLSGFFVC KAVLEESSTV RSCSWSRELN LLAAGCSDAT TAIWKNVGDH
101: AYERIYTLKG HENEVRSVSW DMRGLLLATC GGDKSIWIWE ALPGDEFDCA SVLQGHTADV KIVQWNAVNE LLSVSSDNNI KVWKETSYDS GDWPCIKTLG
201: ESDSDDLTVK IWDCDHDSIE LWSQVCTLPG HHDTKIFAFD WLRESLRWVP EEEEQDPKIF ASAGADDAIH IFIENKDNEV DGLPFKQLLK KEKAHETNIN
301: SVKWHSGDKR RLASASDDGT VKIWEFVCLW PASHNAIDDT SKKYMLLY

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.