Factsheet for Solyc04g016510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	99.39	83.19
GSMUA_Achr11P...	Banana	nucleus	66.39	74.14
KRH31616	Soybean	nucleus	78.07	66.84
KRH72083	Soybean	nucleus	77.25	66.14
Bra004625.1-P	Field mustard	nucleus	65.37	65.24
CDX79933	Canola	nucleus	55.94	63.64
CDY23845	Canola	nucleus	55.74	63.26
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	63.73	61.1
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	63.73	61.1
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	62.91	60.91
EER94850	Sorghum	plastid	64.75	60.77
Bra016929.1-P	Field mustard	nucleus, plastid	67.83	60.73
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	63.32	60.71
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	63.73	60.62
VIT_08s0007g05930.t01	Wine grape	nucleus	81.56	60.39
Os03t0355200-00	Rice	cytosol, nucleus, plastid	64.34	59.92
Os03t0355400-00	Rice	cytosol, nucleus, plastid	64.34	59.92
CDY06918	Canola	cytosol, nucleus, peroxisome	58.4	58.76
AT2G05720.1	Thale cress	cytosol	33.2	58.7
AT2G41500.1	Thale cress	nucleus, plastid	65.78	57.94
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	64.55	57.17
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	63.11	56.83
TraesCS2A01G175200.1	Wheat	plastid	62.7	55.33
CDY14776	Canola	mitochondrion	58.4	51.63
HORVU2Hr1G032990.1	Barley	cytosol	40.98	51.41
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	18.65	50.56
OQU91217	Sorghum	plastid	20.7	41.06
OQU89577	Sorghum	plastid	17.62	40.38
Solyc12g049100.1.1	Tomato	cytosol	16.6	22.95
Solyc09g074400.2.1	Tomato	cytosol	14.75	20.51
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.34	18.92
Solyc07g041080.2.1	Tomato	cytosol, nucleus	12.5	18.89
Solyc12g009030.1.1	Tomato	cytosol, nucleus	12.09	18.27
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.62	17.23
Solyc04g078320.2.1	Tomato	cytosol	20.7	17.06
Solyc12g088630.1.1	Tomato	cytosol	17.83	17.03
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.34	16.71
Solyc09g009410.2.1	Tomato	cytosol, nucleus	11.68	16.38
Solyc12g088620.1.1	Tomato	cytosol	17.21	16.09
Solyc12g088570.1.1	Tomato	cytosol	11.68	15.66
Solyc06g065700.2.1	Tomato	nucleus	21.52	15.33
Solyc03g097160.2.1	Tomato	nucleus	17.01	9.53
Solyc10g039190.1.1	Tomato	nucleus	18.44	9.47

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0017070	GO:GO:0030621	GO:GO:0046540	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:IPR036285	UniProt:K4BQF1	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320
InterPro:PRP4-like	InterPro:PRP4-like_sf	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846
InterPro:Prp4	SMART:SM00320	SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc04g016510.2
EnsemblPlants:Solyc04g016510.2.1	UniParc:UPI0002767172	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:7335360..7338722

Molecular Weight (calculated)

54671.6 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.486

Length

488 amino acids

Sequence
(BLAST)

001: MQENDSDSDL EEMVSGRGAA GSTQEYEISE ESRIVRERQE KALQELLMKR RAAALAVPTN DMAVRARLRR LGEPITLFGE REMERRDRLR MLMARLDAEG
101: QLEKLMKAHE DEEAAASAAP AEEEDIQYPF YTEGSKALLD ARVEIAKYSL VKSALRLHRA RRKRDDPDED VDAEVDWALK QAGSLALDCS EIGDDRPLFG
201: CSLSHDGKML ATCSLSGIAK IWSMPQVQKV STLKGHTERA TDVVFSPTSN YLATASADKT ARLWNSEGSL LRTFEGHLDR LARIAFHPSG KYLGTASFDK
301: TWRLWNVESG EELLLQEGHS RSVYGLSFHH DGSLVASCGL DALVRVWDLR TGRSILALEG HVKPVLGVSF SPNGYHLASG GEDNTCRIWD LRQRRSSYII
401: PAHSNLISQV KFEPQEGYFL ATASYDMTAK VWSSRDFKPV KTLSGHEAKI MSLDVASDGQ FITTVSYDRT IKLWSSKNIE KEEKMDMD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.