CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	95.38	90.02
Os03t0355200-00	Rice	cytosol, nucleus, plastid	90.0	89.31
Os03t0355400-00	Rice	cytosol, nucleus, plastid	90.0	89.31
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	85.0	86.84
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	84.62	86.44
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	83.65	86.31
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	84.23	86.05
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	84.04	85.19
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	84.04	80.63
TraesCS2A01G175200.1	Wheat	plastid	83.85	78.84
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	26.54	76.67
GSMUA_Achr11P...	Banana	nucleus	62.69	74.6
OQU89577	Sorghum	plastid	28.85	70.42
OQU76815	Sorghum	plastid	28.27	69.67
OQU91217	Sorghum	plastid	31.54	66.67
HORVU2Hr1G032990.1	Barley	cytosol	49.23	65.81
Solyc04g016510.2.1	Tomato	nucleus	60.77	64.75
Bra004625.1-P	Field mustard	nucleus	59.81	63.6
CDX79933	Canola	nucleus	50.0	60.61
CDY23845	Canola	nucleus	49.81	60.23
OQU84751	Sorghum	plastid	23.46	60.1
KRH31616	Soybean	nucleus	65.19	59.47
Bra016929.1-P	Field mustard	nucleus, plastid	61.92	59.08
KRH72083	Soybean	nucleus	63.85	58.25
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	64.23	57.29
AT2G41500.1	Thale cress	nucleus, plastid	60.19	56.5
CDY06918	Canola	cytosol, nucleus, peroxisome	52.12	55.88
AT2G05720.1	Thale cress	cytosol	28.85	54.35
VIT_08s0007g05930.t01	Wine grape	nucleus	66.15	52.2
CDY14776	Canola	mitochondrion	52.31	49.28
EES08930	Sorghum	cytosol	13.65	22.05
EER98280	Sorghum	cytosol, nucleus, plastid	13.65	20.58
KXG23186	Sorghum	plastid	7.69	16.39
KXG20501	Sorghum	nucleus	20.19	15.98
EES11818	Sorghum	nucleus, plastid	18.46	15.95
EES12762	Sorghum	cytosol	15.38	9.02
EER95491	Sorghum	nucleus	14.42	8.0

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EntrezGene:8082648	UniProt:C5WZR9	ncoils:Coil
EnsemblPlants:EER94850	ProteinID:EER94850	ProteinID:EER94850.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0017070	GO:GO:0030621	GO:GO:0046540	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR036285	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320
SMART:SM00500	EnsemblPlantsGene:SORBI_3001G370300	SUPFAM:SSF158230	SUPFAM:SSF50978	UniParc:UPI0001A83445	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002467852.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:65858756..65862560

Molecular Weight (calculated)

57754.1 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.513

Length

520 amino acids

Sequence
(BLAST)

001: MENPRPQPPA PTPPMAPLPV HPPIAPIPVP PPRAPAAAAS MASTSTSSAG GGGEAEYELS DDHRAARERH ERAVQELLQR RRAYAMAVPT NDSAVRARLR
101: RLGEPITLFG EREMERRDRL RALMVRLEAD GQVDRLLRAQ EDDQAARAGE EEEEEEQIQY PFFTEGTQEL LKARVDIAQY SLPRAKARIE RAKRRHEDPD
201: EDPEAEAELV VKQAGEFVLE CSEIGDDRPL TGCSFSRDAS MLATSSWSGI IKVWSMPQIT KVATLKGHTE RATDVAFSPA DDCLATASAD RTAKLWKPDG
301: SLLMSFDGHL DRLARLAFHP SGKYLGTASF DKTWRLWDIN TGKELLLQEG HSRSVYGVSF HPDGSLAASC GLDAYARVWD LRSGRLFFAL KGHVKPVLGV
401: SFSPNGYLVA TGSEDNFCRI WDLRKKQMLY SIPAHKSLIS HVKFEPQEGY YLVTSSYDTK AALWSARDYK PINSLVGHES KVTSLDISGD GQKIVTVSHD
501: RTIKIWSCRS STQDNAMELD

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.