Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016929.1-P | Field mustard | nucleus, plastid | 86.64 | 88.07 |
| CDY06918 | Canola | cytosol, nucleus, peroxisome | 76.17 | 87.01 |
| AT2G05720.1 | Thale cress | cytosol | 39.89 | 80.07 |
| CDY14776 | Canola | mitochondrion | 75.63 | 75.91 |
| GSMUA_Achr11P... | Banana | nucleus | 52.89 | 67.05 |
| Solyc04g016510.2.1 | Tomato | nucleus | 57.94 | 65.78 |
| KRH31616 | Soybean | nucleus | 64.98 | 63.16 |
| KRH72083 | Soybean | nucleus | 64.26 | 62.46 |
| HORVU4Hr1G034750.1 | Barley | cytosol, nucleus, plastid | 55.42 | 60.91 |
| TraesCS4B01G163800.1 | Wheat | cytosol, nucleus, plastid | 55.42 | 60.31 |
| TraesCS4D01G160600.1 | Wheat | cytosol, nucleus | 55.42 | 60.31 |
| EER94850 | Sorghum | plastid | 56.5 | 60.19 |
| TraesCS4A01G149100.1 | Wheat | cytosol, nucleus, plastid | 55.23 | 60.12 |
| TraesCS2B01G201600.1 | Wheat | cytosol, nucleus, plastid | 54.87 | 59.26 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 62.27 | 59.18 |
| Os03t0355400-00 | Rice | cytosol, nucleus, plastid | 55.6 | 58.78 |
| Os03t0355200-00 | Rice | cytosol, nucleus, plastid | 55.6 | 58.78 |
| Zm00001d029188_P006 | Maize | cytosol, nucleus, plastid, vacuole | 56.86 | 57.17 |
| TraesCS2D01G182600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 54.51 | 55.72 |
| TraesCS2A01G175200.1 | Wheat | plastid | 54.33 | 54.43 |
| VIT_08s0007g05930.t01 | Wine grape | nucleus | 64.62 | 54.32 |
| HORVU2Hr1G032990.1 | Barley | cytosol | 34.84 | 49.61 |
| OQU81634 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 14.26 | 43.89 |
| OQU89577 | Sorghum | plastid | 15.7 | 40.85 |
| OQU91217 | Sorghum | plastid | 17.87 | 40.24 |
| AT4G29830.1 | Thale cress | cytosol | 12.27 | 21.18 |
| AT2G26060.1 | Thale cress | cytosol | 12.45 | 19.6 |
| AT4G32990.1 | Thale cress | cytosol | 9.75 | 16.46 |
| AT5G67320.1 | Thale cress | cytosol | 17.33 | 15.66 |
| AT5G25150.1 | Thale cress | nucleus | 18.41 | 15.25 |
| AT5G16750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 15.34 | 9.7 |
| AT3G21540.1 | Thale cress | nucleus | 16.43 | 9.53 |
Protein Annotations
| Gene3D:1.10.720.150 | MapMan:16.4.1.3.2 | Gene3D:2.130.10.10 | EntrezGene:818748 | UniProt:A0A178VMW2 | ProteinID:AAB84332.1 |
| ProteinID:AAM14969.1 | ProteinID:AEC09991.1 | EMBL:AK229530 | ProteinID:ANM62834.1 | ArrayExpress:AT2G41500 | EnsemblPlantsGene:AT2G41500 |
| RefSeq:AT2G41500 | TAIR:AT2G41500 | RefSeq:AT2G41500-TAIR-G | EnsemblPlants:AT2G41500.1 | TAIR:AT2G41500.1 | Unigene:At.42825 |
| EMBL:BT008700 | EMBL:BT020589 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000003 | GO:GO:0000398 | GO:GO:0001709 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0007154 | GO:GO:0007267 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009553 | GO:GO:0009560 | GO:GO:0009987 | GO:GO:0016607 | GO:GO:0017070 |
| GO:GO:0030154 | GO:GO:0030621 | GO:GO:0046540 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| InterPro:IPR036285 | Symbol:LIS | RefSeq:NP_001324961.1 | RefSeq:NP_181681.1 | UniProt:O22212 | ProteinID:OAP07144.1 |
| PFAM:PF00400 | PFAM:PF08799 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020090 |
| PO:PO:0020094 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00320 |
| InterPro:PRP4-like | InterPro:PRP4-like_sf | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19846 |
| InterPro:Prp4 | SMART:SM00320 | SMART:SM00500 | SUPFAM:SSF158230 | SUPFAM:SSF50978 | UniParc:UPI00000010A7 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
Coordinates
chr2:-:17304130..17307426
Molecular Weight (calculated)
61845.0 Da
IEP (calculated)
5.426
GRAVY (calculated)
-0.512
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.