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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22910 Canola nucleus 80.73 82.81
CDY54973 Canola nucleus 80.73 82.81
Bra039543.1-P Field mustard nucleus 80.94 81.89
VIT_08s0007g04690.t01 Wine grape nucleus 71.31 71.53
KRH67774 Soybean nucleus, plastid 68.48 69.35
KRG96051 Soybean nucleus 68.38 69.17
PGSC0003DMT400066026 Potato nucleus 68.38 68.74
Solyc10g039190.1.1 Tomato nucleus 68.06 68.42
PGSC0003DMT400034236 Potato cytosol, nucleus, plastid 65.24 66.35
GSMUA_Achr11P... Banana cytosol, golgi, plastid 62.93 63.94
TraesCS4A01G370000.1 Wheat nucleus 60.1 61.06
TraesCS4B01G317800.1 Wheat nucleus 60.0 60.96
Os03t0151700-01 Rice nucleus 58.74 59.68
EER95491 Sorghum nucleus 58.43 59.55
Zm00001d027706_P004 Maize nucleus 58.53 58.29
HORVU4Hr1G083410.1 Barley endoplasmic reticulum 59.58 56.17
AT4G29830.1 Thale cress cytosol 7.02 20.87
AT2G05720.1 Thale cress cytosol 5.97 20.65
AT2G26060.1 Thale cress cytosol 6.81 18.47
AT4G32990.1 Thale cress cytosol 5.97 17.38
AT5G25150.1 Thale cress nucleus 11.83 16.89
AT2G41500.1 Thale cress nucleus, plastid 9.53 16.43
AT5G16750.1 Thale cress cytosol, mitochondrion, nucleus, plastid 14.76 16.1
AT5G67320.1 Thale cress cytosol 8.59 13.38
Protein Annotations
MapMan:17.1.3.2.1.3.3Gene3D:2.130.10.10EntrezGene:821708ProteinID:AEE76521.1ArrayExpress:AT3G21540EnsemblPlantsGene:AT3G21540
RefSeq:AT3G21540TAIR:AT3G21540RefSeq:AT3G21540-TAIR-GEnsemblPlants:AT3G21540.1TAIR:AT3G21540.1Unigene:At.28071
ProteinID:BAB02349.1ncoils:CoilInterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005730GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0030490
GO:GO:0030515GO:GO:0032040GO:GO:0034388InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
RefSeq:NP_188791.3PFAM:PF00400PFAM:PF04003PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PRINTS:PR00320ScanProsite:PS00678
PFscan:PS50082PFscan:PS50294PANTHER:PTHR19853PANTHER:PTHR19853:SF0UniProt:Q9LVF2SMART:SM00320
SUPFAM:SSF50978InterPro:SSU_processome_Utp12UniParc:UPI00000A788EInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CS
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
Coordinates
chr3:-:7585886..7590998
Molecular Weight (calculated)
106071.0 Da
IEP (calculated)
7.308
GRAVY (calculated)
-0.335
Length
955 amino acids
Sequence
(BLAST)
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.