Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066026 | Potato | nucleus | 85.62 | 84.63 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 72.42 | 71.43 |
| KRH67774 | Soybean | nucleus, plastid | 69.44 | 69.14 |
| KRG96051 | Soybean | nucleus | 69.44 | 69.07 |
| CDY54973 | Canola | nucleus | 67.2 | 67.78 |
| CDY22910 | Canola | nucleus | 66.99 | 67.56 |
| Bra039543.1-P | Field mustard | nucleus | 67.2 | 66.84 |
| AT3G21540.1 | Thale cress | nucleus | 66.35 | 65.24 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 63.58 | 63.51 |
| TraesCS4B01G317800.1 | Wheat | nucleus | 59.11 | 59.04 |
| TraesCS4A01G370000.1 | Wheat | nucleus | 59.11 | 59.04 |
| EER95491 | Sorghum | nucleus | 57.72 | 57.84 |
| Os03t0151700-01 | Rice | nucleus | 57.61 | 57.55 |
| Zm00001d027706_P004 | Maize | nucleus | 57.93 | 56.73 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 59.53 | 55.18 |
| PGSC0003DMT400041481 | Potato | cytosol | 8.09 | 23.53 |
| PGSC0003DMT400009959 | Potato | cytosol | 3.3 | 22.46 |
| PGSC0003DMT400000871 | Potato | cytosol | 7.45 | 21.67 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 8.09 | 21.53 |
| PGSC0003DMT400043378 | Potato | cytosol | 6.07 | 20.96 |
| PGSC0003DMT400039889 | Potato | cytosol | 1.28 | 20.69 |
| PGSC0003DMT400034226 | Potato | cytosol | 5.22 | 19.52 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.37 | 18.3 |
| PGSC0003DMT400093026 | Potato | cytosol | 9.58 | 17.61 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 10.33 | 16.64 |
Protein Annotations
| EntrezGene:102582969 | MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1B0C8 |
| PFAM:PF00400 | PFAM:PF04003 | EnsemblPlantsGene:PGSC0003DMG400013161 | PGSC:PGSC0003DMG400013161 | EnsemblPlants:PGSC0003DMT400034236 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | InterPro:Quinoprotein_ADH-like_supfam |
| SMART:SM00320 | SUPFAM:SSF50998 | InterPro:SSU_processome_Utp12 | UniParc:UPI0002960229 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | RefSeq:XP_006367203.1 | SEG:seg | : | : |
Description
Transducin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013161]
Coordinates
chr9:-:9467328..9474043
Molecular Weight (calculated)
104147.0 Da
IEP (calculated)
7.143
GRAVY (calculated)
-0.220
Length
939 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKSYLRYEP AACFGVIVSV ESKIAYDSSG KHLLVPALEK IGIWHVRQGL CTKTLTPLPS SNSKAPSNAV TSISSSSSRI ASGYAQGTIR IWDSEKGMCE
101: TTLNGHKGAV TALRYNKLGS LLASGGKDND IILWDVVAET GLFRLRGHRD QVTDLVFLDS GNKLVTASKD KFLRAWDLDT QHCMQIISGH HSEIWSIDID
201: PEEKYLVTGS ADPELRFYSI NHENKTDMNK ELPTENKWEV LKSFGEIQRQ SKDRVATVKF NKSGNLLACQ VAGKTVEIFR VLDESESKCK AKRRISRKEK
301: KAAKEGREAT EKGETDIEAE GGSNLVVTVP DIFKLHQILW AGKKISSISF SPVTSKNSLA TLALSLNNNL LEFHAIESSS TTKLSAIEIQ GHRADVRSVT
401: LSSDNTLLMS TSHNAIKIWN PTTGSCLHTI DSGYGLCGLF VPGNKYAVVG TKGGTLEIID IRSGTCVEVV EAHGGSVQSI ALIPDGTGFL TGSADHDVKF
501: WEFQIVQKTG EVYKHLTASP GRSLKMNDDV LVVAASPDGK LVAVALSDNT VKVFYMDSLK FFLSLYGHNL PVFCMDISSD GDLLVTGSAD KNVRIWGLVF
601: GDIHKSLFAH ADSVMGIKFV CNTHYFFSVG KDRLVKYWDA DKFELLLTLE GHHAEVWCLA ISNRGDFIVT GSHDRSIRRW DRTEEQLFIE EEKEKRLEEM
701: FALETDNAFE NKYAIKEELP EEGAVALAGK MTQETLTGTD SIIEALDMAN GERKRIAEHE VEKLKGRVSA FRPNILMLGL SPSDYILRAL SSVHTNDLEQ
801: VLLALPFSDN LELFLYLESW AFIPDKVELV GNVAAIVVRL HHHQLISTVS AKPLVTRLED SVPPKVKEFK DLIGGNLAAM CHLEQLMSMR LGVVSRDVKT
901: KLWEIRSCNA KRIEAREDTK QEKKRKKKQK KLDGGHVWS
101: TTLNGHKGAV TALRYNKLGS LLASGGKDND IILWDVVAET GLFRLRGHRD QVTDLVFLDS GNKLVTASKD KFLRAWDLDT QHCMQIISGH HSEIWSIDID
201: PEEKYLVTGS ADPELRFYSI NHENKTDMNK ELPTENKWEV LKSFGEIQRQ SKDRVATVKF NKSGNLLACQ VAGKTVEIFR VLDESESKCK AKRRISRKEK
301: KAAKEGREAT EKGETDIEAE GGSNLVVTVP DIFKLHQILW AGKKISSISF SPVTSKNSLA TLALSLNNNL LEFHAIESSS TTKLSAIEIQ GHRADVRSVT
401: LSSDNTLLMS TSHNAIKIWN PTTGSCLHTI DSGYGLCGLF VPGNKYAVVG TKGGTLEIID IRSGTCVEVV EAHGGSVQSI ALIPDGTGFL TGSADHDVKF
501: WEFQIVQKTG EVYKHLTASP GRSLKMNDDV LVVAASPDGK LVAVALSDNT VKVFYMDSLK FFLSLYGHNL PVFCMDISSD GDLLVTGSAD KNVRIWGLVF
601: GDIHKSLFAH ADSVMGIKFV CNTHYFFSVG KDRLVKYWDA DKFELLLTLE GHHAEVWCLA ISNRGDFIVT GSHDRSIRRW DRTEEQLFIE EEKEKRLEEM
701: FALETDNAFE NKYAIKEELP EEGAVALAGK MTQETLTGTD SIIEALDMAN GERKRIAEHE VEKLKGRVSA FRPNILMLGL SPSDYILRAL SSVHTNDLEQ
801: VLLALPFSDN LELFLYLESW AFIPDKVELV GNVAAIVVRL HHHQLISTVS AKPLVTRLED SVPPKVKEFK DLIGGNLAAM CHLEQLMSMR LGVVSRDVKT
901: KLWEIRSCNA KRIEAREDTK QEKKRKKKQK KLDGGHVWS
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.