Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400009595 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29830.1 | PGSC0003DMT400009595 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 97.52 | 97.52 |
| PGSC0003DMT400000871 | Potato | cytosol | 86.69 | 86.69 |
| VIT_11s0016g01730.t01 | Wine grape | cytosol | 71.21 | 71.65 |
| KRH02663 | Soybean | cytosol, nucleus | 69.66 | 70.09 |
| Bra011139.1-P | Field mustard | cytosol | 69.35 | 69.78 |
| CDY43529 | Canola | cytosol | 69.35 | 69.78 |
| AT4G29830.1 | Thale cress | cytosol | 69.35 | 69.78 |
| CDX68590 | Canola | cytosol | 69.04 | 69.47 |
| CDY03567 | Canola | cytosol | 68.73 | 69.16 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 68.73 | 69.16 |
| CDY14200 | Canola | cytosol | 68.42 | 68.85 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 67.49 | 67.91 |
| Os11t0660300-01 | Rice | cytosol | 63.16 | 63.16 |
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 57.59 | 62.63 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 62.23 | 62.42 |
| EES08930 | Sorghum | cytosol | 61.92 | 62.11 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 61.61 | 61.8 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 61.3 | 61.49 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 60.99 | 57.6 |
| PGSC0003DMT400043378 | Potato | cytosol | 18.27 | 21.69 |
| PGSC0003DMT400009959 | Potato | cytosol | 8.67 | 20.29 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 20.12 | 18.41 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 20.74 | 13.93 |
| PGSC0003DMT400093026 | Potato | cytosol | 21.67 | 13.7 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 18.89 | 10.46 |
| PGSC0003DMT400039889 | Potato | cytosol | 1.55 | 8.62 |
| PGSC0003DMT400066026 | Potato | nucleus | 24.46 | 8.32 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 23.53 | 8.09 |
| PGSC0003DMT400034226 | Potato | cytosol | 5.88 | 7.57 |
Protein Annotations
| MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | ProteinID:ABC01893 | ProteinID:ABC01893.1 | InterPro:Apc4_WD40_dom |
| EMBL:DQ294261 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M1BBF7 | PFAM:PF00400 | PFAM:PF12894 | EnsemblPlantsGene:PGSC0003DMG400016078 |
| PGSC:PGSC0003DMG400016078 | EnsemblPlants:PGSC0003DMT400041481 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR44090 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002955DBC | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
Vernalization independence 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400016078]
Coordinates
chr7:+:37392701..37396898
Molecular Weight (calculated)
34714.8 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.082
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLAPLDSIQ NAHEDSLWTA AWVRSDGDKP ALLLTGGLDE TVRLWDPTKL TCLHTNTGHC LGVVSVTAHP NRRIAASASL DSFIRVFEVD TNNTIATLEA
101: PPSEVWQLQF SPDGSTLAAA GGGSSSVKLW DTTQWQLVAT LSIPRQGGSQ PSEKSGSKKF VLSVAWNTDG RLLACGSVDG TISVFDVARA KFLHFLEGHC
201: MPVRSLVFSP SLHDSRILFS GSDDGHVHVY DAEGKTLLTS LSGHASWVLS VDVSPDGAAV ATGSSDKTVK LWDLKMRAAT QTLTNHTDQV WSVAFGPPSR
301: IDVRSCMLAS VSDDKSISFY QYS
101: PPSEVWQLQF SPDGSTLAAA GGGSSSVKLW DTTQWQLVAT LSIPRQGGSQ PSEKSGSKKF VLSVAWNTDG RLLACGSVDG TISVFDVARA KFLHFLEGHC
201: MPVRSLVFSP SLHDSRILFS GSDDGHVHVY DAEGKTLLTS LSGHASWVLS VDVSPDGAAV ATGSSDKTVK LWDLKMRAAT QTLTNHTDQV WSVAFGPPSR
301: IDVRSCMLAS VSDDKSISFY QYS
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.