Factsheet for PGSC0003DMT400088760

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 3
endoplasmic reticulum 4
plastid 1
cytosol 2
extracellular 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039889	Potato	cytosol	11.43	94.83
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.24	83.51
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.03	81.96
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.94	76.85
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	56.34	76.77
PGSC0003DMT400093026	Potato	cytosol	74.64	70.25
Os07t0405100-01	Rice	cytosol	66.11	57.3
Zm00001d025048_P003	Maize	cytosol	66.32	56.86
TraesCS2D01G235100.1	Wheat	nucleus	65.07	56.3
TraesCS2B01G255700.1	Wheat	nucleus	65.28	56.27
TraesCS2A01G227200.3	Wheat	cytosol	65.28	56.17
KRH61363	Soybean	nucleus	66.32	56.16
GSMUA_Achr6P34790_001	Banana	extracellular	17.67	54.49
HORVU2Hr1G053480.9	Barley	mitochondrion	62.99	54.11
EES11818	Sorghum	nucleus, plastid	66.74	53.32
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.66	52.01
GSMUA_Achr6P34780_001	Banana	cytosol	50.31	51.6
KRH52050	Soybean	cytosol, nucleus, peroxisome	66.32	49.92
PGSC0003DMT400043378	Potato	cytosol	15.38	27.21
PGSC0003DMT400041481	Potato	cytosol	13.93	20.74
PGSC0003DMT400000871	Potato	cytosol	13.31	19.81
PGSC0003DMT400009959	Potato	cytosol	5.41	18.84
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	19.54	16.12
PGSC0003DMT400034226	Potato	cytosol	4.99	9.56
PGSC0003DMT400066026	Potato	nucleus	18.71	9.47
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	18.3	9.37

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
InterPro:LisH	UniProt:M1DGN3	PFAM:PF00400	PFAM:PF08513	EnsemblPlantsGene:PGSC0003DMG400038331	PGSC:PGSC0003DMG400038331
EnsemblPlants:PGSC0003DMT400088760	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896
PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI000294D962
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

Polyadenylation factor subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400038331]

Coordinates

chr12:-:56399348..56403468

Molecular Weight (calculated)

53532.1 Da

IEP (calculated)

6.204

GRAVY (calculated)

-0.479

Length

481 amino acids

Sequence
(BLAST)

001: MASLTSEFLN FIVFRYLFES GFTHSAFTFG YEAGLNRSTM DGHLVPPGAL IQFVQKGIQY LELETNLSND DADMDEDFKL LEPLDLITKD VDELRKIIKE
101: KKEKVQKDKP TRKDKASADH KREPTREREM EKQQKGKERE QDKERSDVMV LEGHTSEVFV CAWSPEGSLL ASGSGDATAR IWTIGDGPCN STIPNVLVLN
201: HLESQATEEN KDVTSLDWNS KGNLLATGSY DGGARIWKRS GELVSTLNKH KGPIIALKWN KKGDYLLSGS TDTTAVIWNV KSGESKQQFD FHSGPLLDVA
301: WRNNNSFATS SSDNMIYVCK VGENKPVKTF SGHQNEINAI KWDSSGSLLA SCSDDTTVKE IYTIKWSPTG AGTSNPNNQL LLASASFDST VKLWDVELGR
401: LLHSLNGHRE PVYSVAFCPN GEYLASGSLD KCMNIWSVKE AKIVKTYNGD GCIFEVCWNK LGNKVAACFA NKKVCVYDMR L

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.