Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039889 | Potato | cytosol | 24.36 | 65.52 |
| CDY57442 | Canola | cytosol | 51.92 | 36.82 |
| KRH04500 | Soybean | cytosol | 53.21 | 29.64 |
| KRH04498 | Soybean | mitochondrion | 40.38 | 24.14 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 48.08 | 21.25 |
| Solyc12g049100.1.1 | Tomato | cytosol | 47.44 | 20.96 |
| Solyc05g014420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 49.36 | 20.81 |
| GSMUA_Achr9P22400_001 | Banana | cytosol | 20.51 | 18.71 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 54.49 | 17.67 |
| KRH28415 | Soybean | nucleus | 58.97 | 16.49 |
| PGSC0003DMT400093026 | Potato | cytosol | 53.85 | 16.44 |
| Solyc12g088630.1.1 | Tomato | cytosol | 52.56 | 16.05 |
| KRH61363 | Soybean | nucleus | 58.33 | 16.02 |
| VIT_07s0129g00690.t01 | Wine grape | nucleus | 60.9 | 15.91 |
| Solyc12g088540.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.64 | 15.83 |
| CDY18648 | Canola | cytosol | 57.05 | 15.56 |
| AT5G67320.1 | Thale cress | cytosol | 58.97 | 15.01 |
| Solyc05g014460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 39.74 | 14.8 |
| Solyc12g088620.1.1 | Tomato | cytosol | 49.36 | 14.75 |
| Bra037118.1-P | Field mustard | cytosol | 57.05 | 14.54 |
| CDX81324 | Canola | cytosol | 57.05 | 14.5 |
| KRH58014 | Soybean | nucleus | 57.05 | 14.26 |
| KRH52050 | Soybean | cytosol, nucleus, peroxisome | 58.33 | 14.24 |
| Solyc04g078320.2.1 | Tomato | cytosol | 53.85 | 14.19 |
| VIT_18s0001g09600.t01 | Wine grape | cytosol | 40.38 | 11.52 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 14.74 | 7.17 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 15.38 | 6.9 |
| GSMUA_Achr11P... | Banana | nucleus | 17.95 | 6.41 |
| Solyc12g088570.1.1 | Tomato | cytosol | 12.18 | 5.22 |
| GSMUA_Achr7P26980_001 | Banana | nucleus | 21.15 | 4.32 |
| GSMUA_Achr6P34780_001 | Banana | cytosol | 9.62 | 3.2 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 17.31 | 2.87 |
| GSMUA_Achr11P... | Banana | mitochondrion | 14.1 | 2.39 |
| CDY57444 | Canola | cytosol, mitochondrion | 3.85 | 2.07 |
| KRH04503 | Soybean | nucleus | 3.85 | 1.8 |
| GSMUA_Achr9P22410_001 | Banana | cytosol | 1.28 | 0.54 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr6G34790_001 |
| EnsemblPlants:GSMUA_Achr6P34790_001 | EnsemblPlants:GSMUA_Achr6T34790_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0TCS2 |
| PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22846 | PANTHER:PTHR22846:SF2 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0002968534 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
Putative F-box-like/WD repeat-containing protein TBL1X [Source:GMGC_GENE;Acc:GSMUA_Achr6G34790_001]
Coordinates
chr6:+:33252753..33253977
Molecular Weight (calculated)
17908.5 Da
IEP (calculated)
6.240
GRAVY (calculated)
0.062
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMVWVSYFQ MTETLDLVIH FYIRTLWITI FFSPTFNIVN QPPPSFQVAA RAAEEDYWLA SFDSTIKLWD AEQGRLLCSL NGHRQPVYSV AFSPNGEYLA
101: SGSLDQSLHI WSVKEGRILK TYKGRGGIFE VCWNREGDKI AACFANSSIC VMDFRM
101: SGSLDQSLHI WSVKEGRILK TYKGRGGIFE VCWNREGDKI AACFANSSIC VMDFRM
001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM
Arabidopsis Description
HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.