CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04500	Soybean	cytosol	44.8	89.29
CDY57442	Canola	cytosol	29.75	75.45
KRH58014	Soybean	nucleus	82.08	73.4
KRH04498	Soybean	mitochondrion	34.05	72.8
VIT_07s0129g00690.t01	Wine grape	nucleus	77.42	72.36
CDY18648	Canola	cytosol	68.1	66.43
Os07t0405100-01	Rice	cytosol	65.59	65.95
Zm00001d025048_P003	Maize	cytosol	66.13	65.78
AT5G67320.1	Thale cress	cytosol	71.86	65.42
KRH61363	Soybean	nucleus	66.49	65.32
TraesCS2A01G227200.3	Wheat	cytosol	65.23	65.12
TraesCS2B01G255700.1	Wheat	nucleus	65.05	65.05
TraesCS2D01G235100.1	Wheat	nucleus	64.7	64.93
Bra037118.1-P	Field mustard	cytosol	70.07	63.89
CDX81324	Canola	cytosol	69.89	63.52
GSMUA_Achr6P34780_001	Banana	cytosol	52.51	62.47
HORVU2Hr1G053480.9	Barley	mitochondrion	62.54	62.32
EES11818	Sorghum	nucleus, plastid	65.77	60.96
KRH04503	Soybean	nucleus	36.38	60.78
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.7	60.37
GSMUA_Achr6P34790_001	Banana	extracellular	16.49	58.97
KRH52050	Soybean	cytosol, nucleus, peroxisome	66.67	58.22
CDY57444	Canola	cytosol, mitochondrion	21.33	41.03
KRH67917	Soybean	cytosol	15.77	25.66
KRG99418	Soybean	cytosol, extracellular, plastid	3.94	25.29
KRH33352	Soybean	plastid	10.57	23.23
KRH02663	Soybean	cytosol, nucleus	12.01	20.87
KRH19247	Soybean	cytosol, endoplasmic reticulum	12.01	20.87
KRH15679	Soybean	cytosol	4.66	20.47
KRH31616	Soybean	nucleus	17.74	17.37
KRH72083	Soybean	nucleus	17.74	17.37
KRH05348	Soybean	nucleus	17.92	15.2
KRH61671	Soybean	nucleus	18.1	15.1
KRH52333	Soybean	nucleus	17.74	14.93
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	11.65	14.51
KRG94333	Soybean	cytosol	5.02	13.86
KRG96051	Soybean	nucleus	16.49	9.75
KRH03286	Soybean	nucleus	15.05	9.56
KRH67774	Soybean	nucleus, plastid	16.13	9.54
KRH57076	Soybean	plasma membrane	14.16	9.34

Protein Annotations

Gene3D:1.20.960.30	EntrezGene:100794963	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	EMBL:ACUP02006750	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_11G051700	GO:GO:0000118	GO:GO:0003674	GO:GO:0003714	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006357	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0019538	GO:GO:1903507	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7LN56	EnsemblPlants:KRH28415	ProteinID:KRH28415
ProteinID:KRH28415.1	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2	SMART:SM00320
SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI000233D5B4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:3875359..3886366

Molecular Weight (calculated)

62544.7 Da

IEP (calculated)

6.050

GRAVY (calculated)

-0.518

Length

558 amino acids

Sequence
(BLAST)

001: MTSVTSVELN LLVFRYFQES GFTHAAFAFG NEASINKSPI DGKLIPPGAL ITLVQKGLQY LEMEANLSNC DADLDEDFSF LQPLDLITKD VHELRKMVNE
101: RRKILQKNRN KESEKENEGG RGWLKEKGRH EREKECERDG EKAENLKELE QQHYNQSCRE MVIDQEDLVT VKHAENKAFG GTEPMDVSTT STLQPCQIPR
201: SDVIVLEGHT SEVCACAWSP TGSLLASGSG DSTARIWTIA EGRCKSALLN GPPNVLVLKH VRGKTNEKSN DVTTLDWNGE GTLLATGSYD GQARIWTTNG
301: ELKSTLSKHK GPIFSLKWNK KGDYILTGSC DQTAIVWDVK AEEWKQQFEF HSGWTLDVDW RNNVSFATSS TDTKIHVCKI GENLPIRTFV GHQSEVNCIK
401: WDPTGSLLAS CSDDMTAKIW SMKQDKYLHE FREHSKEIYT IRWSPTGPGT NNPNKNLVLA SASFDSTVKL WDVELGKLLY SLNGHRDRVY SVAFSPNGEY
501: IASGSPDRSM LIWSLKEGKI VKTYTGDGGI FEVCWNKEGD KIAACFANNT VCVLDFRM

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.