CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	48.92	95.98
KRG94333	Soybean	cytosol	21.73	94.55
KRH57076	Soybean	plasma membrane	88.17	91.61
PGSC0003DMT400009959	Potato	cytosol	12.29	78.26
VIT_16s0039g01690.t01	Wine grape	cytosol	73.15	71.44
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	65.76	65.98
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.73	65.55
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.73	65.55
Solyc03g097160.2.1	Tomato	nucleus	63.14	63.72
GSMUA_Achr11P...	Banana	mitochondrion	65.3	62.32
TraesCS7B01G423400.1	Wheat	nucleus	61.77	61.7
TraesCS2B01G468100.1	Wheat	nucleus	62.23	61.67
HORVU2Hr1G106110.11	Barley	mitochondrion	61.77	61.63
Os04t0592700-01	Rice	nucleus	62.34	61.5
TraesCS7D01G500800.1	Wheat	mitochondrion	61.66	61.45
TraesCS2A01G447700.1	Wheat	mitochondrion	61.77	61.36
EES12762	Sorghum	cytosol	61.77	61.22
TraesCS2D01G446600.2	Wheat	mitochondrion	61.77	61.22
PGSC0003DMT400034226	Potato	cytosol	17.41	60.96
Zm00001d002483_P002	Maize	mitochondrion	61.66	59.56
Zm00001d026195_P002	Maize	cytosol	61.43	58.5
KRG99418	Soybean	cytosol, extracellular, plastid	2.62	26.44
KRH02663	Soybean	cytosol, nucleus	7.85	21.5
KRH19247	Soybean	cytosol, endoplasmic reticulum	7.62	20.87
KRH15679	Soybean	cytosol	2.84	19.68
KRH67917	Soybean	cytosol	7.17	18.37
KRH52333	Soybean	nucleus	13.65	18.1
KRH61671	Soybean	nucleus	13.77	18.09
KRH05348	Soybean	nucleus	13.31	17.78
KRH04500	Soybean	cytosol	5.57	17.5
KRG96051	Soybean	nucleus	17.63	16.42
KRH67774	Soybean	nucleus, plastid	17.29	16.12
KRH72083	Soybean	nucleus	9.9	15.26
KRH31616	Soybean	nucleus	9.9	15.26
KRH28415	Soybean	nucleus	9.56	15.05
KRH61363	Soybean	nucleus	9.56	14.79
KRH33352	Soybean	plastid	4.21	14.57
KRH04498	Soybean	mitochondrion	4.21	14.18
KRH58014	Soybean	nucleus	9.67	13.62
KRH52050	Soybean	cytosol, nucleus, peroxisome	9.67	13.3
KRH04503	Soybean	nucleus	3.98	10.48
CDY12834	Canola	endoplasmic reticulum, extracellular	1.14	5.38

Protein Annotations

EntrezGene:100783244	MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	EMBL:ACUP02010342	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_17G089100
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0032040
GO:GO:0034388	UniProt:I1MTH0	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH03286
ProteinID:KRH03286	ProteinID:KRH03286.1	PFAM:PF00400	PFAM:PF08625	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15	SMART:SM00320	SUPFAM:SSF50978
InterPro:SSU_processome_Utp13	UniParc:UPI000233F1F2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:6907137..6921321

Molecular Weight (calculated)

96739.2 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.133

Length

879 amino acids

Sequence
(BLAST)

001: MEPLRLKTNY RCVPALQQFY TGGPFVVSSD SSFIACACGE SIKIVDSATA AIRSTLDADS ESFTALALSP DDRLLFSSGH SRQIRVWDLS TLKCVRSWKG
101: HEGPVMCMTC HPSGGLLATG GADRKVLVWD VDGGYCTHYF KGHGGVVSCV MFHSDPEKQL LFSGSDDGGD HATVRVWDIS KTKKKNCIAT LDNHSSAVTS
201: LALSEDGWTL LSAGRDKVVT LWDLHGYSGK KTVITNEAVE AVCVIGAGSP FASSLDLYQQ NAKIHDGSEI FYFITVGERG IVRIWNSKGA GCIFEQKTSD
301: VTAGMDEDGS RRGFTSAVML ASDQGLLCVT ADQQFLFYSL DFTEQLLQLN LTKRLVGYNE EIVDMKFIGD DEKFLALATN LEQIRVYDLS SMSCSYVLSG
401: HTEIVLCLDS CVSSSGKPLI VTGSKDNSVR LWEPESANCI GVGIGHMGAV GAIAFSKRKR DFFVSGSSDH TLKVWSMDGL LDNMTVPINL KAKAVVAAHD
501: KDINSVAVAP NDSLVCSGSQ DRTACVWRLP DLVSVVVFKG HKRGIWSVEF SPVDQCVVTA SGDKTIRIWA ISDGSCLKTF EGHTSSVLRA LFVTRGTQIV
601: SCGADGLVKL WTVKTNECVA TYDHHEDKVW ALAVGRKTEK LATGGGDAVV NLWFDSTAAD KEEAFRKEEE GVVKGQELEN AVSDADYTKA IQIAFELRRP
701: HRLFELFAEL CRKREAEDHM DRALKGLDSE ELRILFNYVR EWNTKPKLCY VSQFVLFRVF CIFPPTDIVQ IKGIGEYLEG LIPYSQRHFG RIDRLVRSTF
801: LLDYILSGMS VIEPQAQLTE SKTELLLQSE IGIPDPDKEN DTNEITASKK RKSNKSKHGS HKKVKNVAYN KVESIQLQA

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.