CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67774	Soybean	nucleus, plastid	96.61	96.71
VIT_08s0007g04690.t01	Wine grape	nucleus	77.54	76.89
PGSC0003DMT400066026	Potato	nucleus	73.31	72.84
Solyc10g039190.1.1	Tomato	nucleus	73.09	72.63
CDY22910	Canola	nucleus	69.7	70.68
CDY54973	Canola	nucleus	69.6	70.57
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	69.07	69.44
Bra039543.1-P	Field mustard	nucleus	69.28	69.28
AT3G21540.1	Thale cress	nucleus	69.17	68.38
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	66.84	67.13
TraesCS4A01G370000.1	Wheat	nucleus	63.03	63.3
TraesCS4B01G317800.1	Wheat	nucleus	62.82	63.09
Os03t0151700-01	Rice	nucleus	61.33	61.6
EER95491	Sorghum	nucleus	60.81	61.26
Zm00001d027706_P004	Maize	nucleus	60.91	59.96
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	63.03	58.74
KRG99418	Soybean	cytosol, extracellular, plastid	2.54	27.59
KRH02663	Soybean	cytosol, nucleus	7.52	22.12
KRH19247	Soybean	cytosol, endoplasmic reticulum	7.42	21.81
KRG94333	Soybean	cytosol	4.66	21.78
KRH15679	Soybean	cytosol	2.75	20.47
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	9.43	19.87
KRH67917	Soybean	cytosol	6.99	19.24
KRH04500	Soybean	cytosol	5.61	18.93
KRH03286	Soybean	nucleus	16.42	17.63
KRH61671	Soybean	nucleus	12.29	17.34
KRH52333	Soybean	nucleus	11.97	17.04
KRH31616	Soybean	nucleus	9.96	16.49
KRH28415	Soybean	nucleus	9.75	16.49
KRH04498	Soybean	mitochondrion	4.56	16.48
KRH05348	Soybean	nucleus	11.33	16.26
KRH72083	Soybean	nucleus	9.75	16.14
KRH57076	Soybean	plasma membrane	14.3	15.96
KRH61363	Soybean	nucleus	9.11	15.14
KRH33352	Soybean	plastid	4.03	14.96
KRH58014	Soybean	nucleus	9.64	14.58
KRH52050	Soybean	cytosol, nucleus, peroxisome	9.32	13.77
KRH04503	Soybean	nucleus	4.13	11.68

Protein Annotations

EntrezGene:100775810	MapMan:17.1.3.2.1.3.3	Gene3D:2.130.10.10	EMBL:ACUP02012144	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_19G186600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030490	GO:GO:0030515	GO:GO:0032040
GO:GO:0034388	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7MZ38	EnsemblPlants:KRG96051
ProteinID:KRG96051	ProteinID:KRG96051.1	PFAM:PF00400	PFAM:PF04003	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19853	PANTHER:PTHR19853:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:SSU_processome_Utp12	UniParc:UPI000233F480	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:44502848..44511810

Molecular Weight (calculated)

104804.0 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.335

Length

944 amino acids

Sequence
(BLAST)

001: MVKAYLRYEP AASFGVIASV DSNISYDSSG KHLLSPALEK IGVWHVRQGL CTKTLTPSSS SRGPSPSVTS IASSPSSLIA GGYGDGSIRI WDSDKGTCET
101: TLNGHKGAVT TLRYNKAGSL LASGSRDNDV ILWDVVGETG LFRLRGHRDQ VTDVVFMSSG KKLVSSSKDK FLRVWDIDTQ HCMQIVGGHH SEIWSLDVDL
201: DERYLVTGSA DNELRFYAIK HESVDGESVN GGEESSVQNK WEVLRHFGEI QRQSKDRVAT VQFNKSGSLL ACQVAGKTVE IYRILDDAEA KRKAKRRVHR
301: KKEKKHSKEA LEGIENGDRN NENKGDDSSV THGPMETSNP TVTVADVFKL LHTIRAGKKI CSISFCPVTP KNSLASLALS LNNNLLEFYS IEQGETKKTL
401: AIDLQGHRSD VRSVTLSSDN TFLMSTSHNA IKIWNPSTGS CLRTIDSGYG LCSLILPTNK YGLVGTKDGT IEIIDIGSGT CVEVMEAHGG SVRSIAALPH
501: KNGFVTGSAD HDVKFWEYQI KQKPGQAAKQ LTVSNVSTMK MNDDALVVAI SPDAKYIAVA LLDSTVKVHF ADTFKFFLSL YGHKLPVLCM DISSDGDLIV
601: TGSADKNIKI WGLDFGDCHK SIFAHADSVM AVQFVPKTHY VFSVGKDRLV KYWDADKFEL LLTLEGHHAD IWCLAVSNRG DFIVTGSHDR SIRLWDRTEE
701: QFFIEEEKEK RLEEMFEADI DNAFENKYVS KEEIPEEGAV ALAGKQTQET LSATDLIIER LDIAEAEEKR IAEHQEEKNN RNVAVFQANP LMNGLSPSDY
801: VLSAFSDVHS NDLEQTLLAL PFSDALKLLS YLKDWTSYSD KVELVCRIGT LLLQTHYNQL LTTPAARPIL TVFSDIFHER VKGWKDIFGF NLAAMDHIQQ
901: MMASRSDALF HDARSKLLEI RARQSKRLEE RSDTGEVKRK KKKT

Best Arabidopsis Sequence Match ( AT3G21540.1 )
(BLAST)

001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.