CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH02410
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH24348
KRH30849
KRH32528
KRH32724
KRH39697
KRH47589
KRH50675
KRH52077
KRH52333
KRH61389
KRH61671
KRH62676
KRH73515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	KRH06174	AT1G17440.1	17340043
AT5G25150.1	KRH47589	AT1G17440.1	17340043
AT5G25150.1	KRH05606	AT1G27720.1	17340043
AT5G25150.1	KRH15434	AT1G27720.1	17340043
AT5G25150.1	KRH52077	AT1G27720.1	17340043
AT5G25150.1	KRH61389	AT1G27720.1	17340043
AT5G25150.1	KRH39697	AT1G32750.1	17340043
AT5G25150.1	KRH62676	AT1G32750.1	17340043
AT5G25150.1	KRH02410	AT1G54140.1	17340043
AT5G25150.1	KRH50675	AT1G54140.1	17340043
AT5G25150.1	KRH73515	AT1G54140.1	17340043
AT5G25150.1	KRH30849	AT3G10070.1	17340043
AT5G25150.1	KRH32724	AT3G10070.1	17340043
AT5G25150.1	KRH19914	AT4G34340.1	17340043
AT5G25150.1	KRH32528	AT4G34340.1	17340043
AT5G25150.1	KRG99418	AT5G25150.1	17340043
AT5G25150.1	KRH05348	AT5G25150.1	17340043
AT5G25150.1	KRH15679	AT5G25150.1	17340043
AT5G25150.1	KRH52333	AT5G25150.1	17340043
AT5G25150.1	KRH61671	AT5G25150.1	17340043
AT5G25150.1	KRH24348	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044810_P001	Maize	nucleus	16.72	85.27
GSMUA_Achr9P22400_001	Banana	cytosol	21.28	81.87
KRH52333	Soybean	nucleus	77.96	77.38
KRH61671	Soybean	nucleus	78.57	77.28
Zm00001d053142_P001	Maize	nucleus	18.54	75.78
VIT_04s0008g05780.t01	Wine grape	nucleus	75.08	73.08
KRG99418	Soybean	cytosol, extracellular, plastid	9.27	70.11
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	19.45	69.95
HORVU0Hr1G022460.1	Barley	nucleus	51.98	69.94
AT5G25150.1	Thale cress	nucleus	70.97	69.81
CDX87098	Canola	nucleus	70.67	69.61
Bra036534.1-P	Field mustard	nucleus	70.67	69.61
CDY19814	Canola	nucleus	70.52	69.46
TraesCS7B01G416400.1	Wheat	nucleus	51.22	68.92
CDY05473	Canola	nucleus	68.39	67.57
CDY05378	Canola	nucleus	67.93	67.32
Bra020485.1-P	Field mustard	nucleus	68.09	67.27
KXG20501	Sorghum	nucleus	66.41	66.51
TraesCS7A01G508300.2	Wheat	nucleus	66.11	66.31
Zm00001d016330_P001	Maize	extracellular	14.59	66.21
Solyc06g065700.2.1	Tomato	nucleus	68.84	66.13
Os06t0649500-01	Rice	nucleus	65.65	66.06
TraesCS5A01G317800.1	Wheat	nucleus	65.81	66.01
TraesCS5D01G324200.2	Wheat	nucleus	65.81	66.01
HORVU7Hr1G113760.2	Barley	nucleus	65.81	66.01
TraesCS5B01G318400.1	Wheat	nucleus	65.65	65.85
TraesCS7D01G496500.1	Wheat	nucleus	65.05	65.75
Zm00001d046810_P002	Maize	nucleus	66.26	64.78
KRH15679	Soybean	cytosol	11.09	57.48
GSMUA_Achr9P22410_001	Banana	cytosol	32.22	56.84
GSMUA_Achr7P26980_001	Banana	nucleus	65.65	56.54
KRH02663	Soybean	cytosol, nucleus	11.4	23.36
KRH19247	Soybean	cytosol, endoplasmic reticulum	11.4	23.36
KRH04500	Soybean	cytosol	8.97	21.07
KRH67917	Soybean	cytosol	10.33	19.83
KRH04498	Soybean	mitochondrion	7.6	19.16
KRG94333	Soybean	cytosol	5.62	18.32
KRH28415	Soybean	nucleus	15.2	17.92
KRH72083	Soybean	nucleus	14.89	17.19
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	11.55	16.96
KRH33352	Soybean	plastid	6.53	16.93
KRH31616	Soybean	nucleus	14.59	16.84
KRH58014	Soybean	nucleus	15.05	15.87
KRH61363	Soybean	nucleus	13.68	15.85
KRH52050	Soybean	cytosol, nucleus, peroxisome	13.83	14.24
KRH03286	Soybean	nucleus	17.78	13.31
KRH57076	Soybean	plasma membrane	15.65	12.17
KRH04503	Soybean	nucleus	5.93	11.68
KRH67774	Soybean	nucleus, plastid	16.26	11.35
KRG96051	Soybean	nucleus	16.26	11.33

Protein Annotations

Gene3D:1.25.40.500	EntrezGene:100790500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	EMBL:ACUP02010729
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_17G222200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264	UniProt:K7MNC0	EnsemblPlants:KRH05348	ProteinID:KRH05348
ProteinID:KRH05348.1	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF160897	SUPFAM:SSF50978
InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI000295B447	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:37480825..37500894

Molecular Weight (calculated)

72834.8 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.408

Length

658 amino acids

Sequence
(BLAST)

001: MDEDQIEGCV SGYLKQKGFT QNDDQLQLTN TDSSLQPDTL NRAQLERGSA RYHDGYGRLR SWAYRSLDSY KHELLRVLFP LFIHCFMDLV AKGNLQEAWN
101: FFNTFREDHE MMHSRDLQKL ELVLSPTHFK EMEFAHSLRQ SKFNIKICGY SYELLMQHLH SMQSTTIIGI INEHISFQVT AGQPSSTSDD PEAVSLIGNI
201: KDEANQINQK EILWGMFKDS AEDCVDKTGS LLSDTEKGEG EGKEGENDEI KKRSIDGGKQ GSSIKKAKKD KAGSATGKNA KPEANTVSAA PRIKPELPLP
301: TFSTDVELSI LEDLRNRVQL SSVALPSVNF YTIVNTHNGL SCSSISHDGS LIAGGFSDSS LKVWDMAKLE KQPTTSFSQG GNDTSQNEQN IGQNSGKRLC
401: TLFQGHSGPV YAATFSPAGD FILSSSADKT IRLWSTKLNA NLVCYKGHNY PIWDVQFSPA GHYFASCSHD RTARIWSMDR IQPLRIMAGH LSDVDCVQWH
501: VNCNYIATGS SDKTVRLWDV QSGECVRVFI GHRSMILSLA MSPDGRYMAS GDEDGTIMMW DLSSGCCVTP LVGHTSCVWS LAFSCEGSLL ASGSADCTVK
601: FWDVTTGIKV PRNEENRSGN TNRLRSLKSL PTKSASVYSL QFCRRNLLFA AGAIAKTG

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.