Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52077 | Soybean | nucleus | 91.37 | 89.6 |
| KRH15434 | Soybean | nucleus | 64.15 | 62.78 |
| KRH05606 | Soybean | mitochondrion | 63.5 | 59.53 |
| CDX71498 | Canola | cytosol | 6.78 | 58.49 |
| CDX71499 | Canola | nucleus | 8.85 | 50.94 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 51.26 | 50.65 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 3.61 | 48.53 |
| Bra035961.1-P | Field mustard | nucleus | 39.89 | 46.85 |
| Solyc04g078050.2.1 | Tomato | nucleus | 47.43 | 46.47 |
| Bra033662.1-P | Field mustard | nucleus | 38.69 | 45.91 |
| AT5G43130.2 | Thale cress | nucleus | 41.64 | 44.72 |
| Os03t0441000-01 | Rice | nucleus | 34.32 | 38.34 |
| AT1G27720.1 | Thale cress | nucleus | 29.4 | 37.36 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 33.55 | 36.68 |
| KXG31790 | Sorghum | nucleus | 29.51 | 36.59 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 33.88 | 36.51 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 33.22 | 35.93 |
| OQU92338 | Sorghum | nucleus | 35.19 | 35.74 |
| Os02t0654400-01 | Rice | nucleus | 28.31 | 35.58 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 33.33 | 35.1 |
| Zm00001d039729_P004 | Maize | nucleus | 29.29 | 34.67 |
| Zm00001d029598_P003 | Maize | nucleus | 34.21 | 33.73 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 28.96 | 33.46 |
| PGSC0003DMT400055395 | Potato | nucleus | 21.31 | 33.28 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 28.74 | 33.04 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 28.63 | 32.96 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 28.96 | 31.62 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 26.34 | 30.01 |
| Zm00001d039731_P002 | Maize | nucleus | 14.54 | 25.29 |
Protein Annotations
| EntrezGene:100798514 | MapMan:15.3.5.3.4 | EMBL:ACUP02002162 | ncoils:Coil | EnsemblPlantsGene:GLYMA_04G044700 | GO:GO:0001075 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003713 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0045944 | GO:GO:0051123 | UniProt:K7KI24 |
| ProteinID:KRH61387.1 | ProteinID:KRH61388.1 | EnsemblPlants:KRH61389 | ProteinID:KRH61389 | ProteinID:KRH61389.1 | ProteinID:KRH61390.1 |
| PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF14 | InterPro:RST | InterPro:TAF4 |
| UniParc:UPI00029501D9 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:3569795..3577942
Molecular Weight (calculated)
100687.0 Da
IEP (calculated)
8.659
GRAVY (calculated)
-0.902
Length
915 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSIVKLLE DDEDESMHSG ADVEAFQAAL NRDIGGDTST SQLSGSDTGS NNSLSQSLPK WPTSSHDNQS DCHNQEPKVV QHQEQRHSSE MEQKPQQPLV
101: EQLHNVASKD AINLPSSQKQ SQDESVQGHT VQAPHQNSQT NGIQNSEKDP VFNHEAVNTH NSNHGSQYAK LQQMSNQQAT VNEQPGSQVN RNKQVPFAML
201: LPMLIPQLPK DRAMQLQTLF NKLKKDEMPK DQFVRLMKGI VGDQMLRLAL TKVQLQTRSN PGPAGQQHPP VRMPNVNSGA TKFNDPHALA QLHQRSMNAA
301: ADQSNNTSSA VQVKNEPTYP TMEINAKKSQ KLDVQVESEG VQLNQLPSSS SNAVSQEMER SSLHLQGLNK EQQQHLHFPS AYGSSGGNYN PFSGSTSSST
401: SSLRPQPLDS HMRQIPHQSI SPNQLGGTTQ GLIGLTKLDQ QNSFNDPKRM PGGFVSPMVN NTASQLTTNS WQPSANKEQN SASFSSVPYV KKEPNDLSTE
501: QQHRHNVSNQ GTLKEEFSRG LPASTSMLHT TSSSLLPLNS SSPSVSQLDP SATLSSQIPS NTSVINARTP LKKPSPGQKK PIEALGSSPP PPSKKQKVSG
601: ASLEPSIEQL NDVTAVSGVD LREEEEQLFS GPKEDSRASE AFRRVVQEEE ERLILQKAPL QRKLIEIITE CGLKSMSDDL ERCLSLCVEE RMRGVISNVI
701: RMSKQRVDLE KTRHRTVVTS DVRQQILTMN RKAREEWEKK QAETEKLRKL NDVDCNAGID GDKEKDEGRT KAMKVNKEVD DKMRTNAANV AARAAVGGDD
801: MLSKWQLMAE QARQKKRGGG MDASSGSQPA KDVSHRSSST SGRSTKDNQA REKKGPTSGA GRKFGRSHAT TPQTSIARSI SVKDVIAVLE REPQMSKSSL
901: LYRLYERIHS DTSTE
101: EQLHNVASKD AINLPSSQKQ SQDESVQGHT VQAPHQNSQT NGIQNSEKDP VFNHEAVNTH NSNHGSQYAK LQQMSNQQAT VNEQPGSQVN RNKQVPFAML
201: LPMLIPQLPK DRAMQLQTLF NKLKKDEMPK DQFVRLMKGI VGDQMLRLAL TKVQLQTRSN PGPAGQQHPP VRMPNVNSGA TKFNDPHALA QLHQRSMNAA
301: ADQSNNTSSA VQVKNEPTYP TMEINAKKSQ KLDVQVESEG VQLNQLPSSS SNAVSQEMER SSLHLQGLNK EQQQHLHFPS AYGSSGGNYN PFSGSTSSST
401: SSLRPQPLDS HMRQIPHQSI SPNQLGGTTQ GLIGLTKLDQ QNSFNDPKRM PGGFVSPMVN NTASQLTTNS WQPSANKEQN SASFSSVPYV KKEPNDLSTE
501: QQHRHNVSNQ GTLKEEFSRG LPASTSMLHT TSSSLLPLNS SSPSVSQLDP SATLSSQIPS NTSVINARTP LKKPSPGQKK PIEALGSSPP PPSKKQKVSG
601: ASLEPSIEQL NDVTAVSGVD LREEEEQLFS GPKEDSRASE AFRRVVQEEE ERLILQKAPL QRKLIEIITE CGLKSMSDDL ERCLSLCVEE RMRGVISNVI
701: RMSKQRVDLE KTRHRTVVTS DVRQQILTMN RKAREEWEKK QAETEKLRKL NDVDCNAGID GDKEKDEGRT KAMKVNKEVD DKMRTNAANV AARAAVGGDD
801: MLSKWQLMAE QARQKKRGGG MDASSGSQPA KDVSHRSSST SGRSTKDNQA REKKGPTSGA GRKFGRSHAT TPQTSIARSI SVKDVIAVLE REPQMSKSSL
901: LYRLYERIHS DTSTE
001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEEKPQ PRYMKLQKMS SKETPWVEKT VDPVNHNLRL ARVTDLLRTV VDHQPGKKTH CLNLHYKLKR
101: KELTMEEFMR QLRDLVGDQI IRSVISQLPQ LKPGNMGIKV PGRSNHDKVS KSAEFTAQES DPREVHVNQL SSTTSGTLNS STTVQGLNKH PEQHMQLPSS
201: SFHMDTKSGS LNPYPGTNVT SPGSSSRAKL PDFQHRENNQ NVGIASVGGP TKSTINMTTV PKFERPTFVN GPSRVQDGPI SDFPKNSSFP LYSAPWQGSV
301: TKDHTVGPSS SVIHVEHKLI DQSFEQAHKP RYLVQQGVTN VPLKQKNAIP ISSNDDLEKQ SSKMGLFTST TSASSVFPSM TTQLDSSTMV NMPAPSETIP
401: KIANVTVTPK MPSVGQKKPL EALGSSLPPS RKKQKICGTS SDESIEKFND VTAVSGINLR EEEKQLLDSG PKKNDRVSKA YRRLVHGEEE RTLLQKIPLQ
501: RKLTEIMGKS GLKHIDHDVE RCLSLCVEER MRGLLFNIIR ISKQRTDAEK CRNRTFITSD IRKEINEMNQ KVKEEWEKKH SGEEKNKEND TEKEDQRSNE
601: VKANKKDEDK ERAKAANVAV RAAVGGDDRF SKWKLMAEAR QRSSPGPGRN SKKLSGGTQF GKNQGLPKVV RSISVKDVIA VVEKEPQMSR STLLYRVYNR
701: ICSDV
101: KELTMEEFMR QLRDLVGDQI IRSVISQLPQ LKPGNMGIKV PGRSNHDKVS KSAEFTAQES DPREVHVNQL SSTTSGTLNS STTVQGLNKH PEQHMQLPSS
201: SFHMDTKSGS LNPYPGTNVT SPGSSSRAKL PDFQHRENNQ NVGIASVGGP TKSTINMTTV PKFERPTFVN GPSRVQDGPI SDFPKNSSFP LYSAPWQGSV
301: TKDHTVGPSS SVIHVEHKLI DQSFEQAHKP RYLVQQGVTN VPLKQKNAIP ISSNDDLEKQ SSKMGLFTST TSASSVFPSM TTQLDSSTMV NMPAPSETIP
401: KIANVTVTPK MPSVGQKKPL EALGSSLPPS RKKQKICGTS SDESIEKFND VTAVSGINLR EEEKQLLDSG PKKNDRVSKA YRRLVHGEEE RTLLQKIPLQ
501: RKLTEIMGKS GLKHIDHDVE RCLSLCVEER MRGLLFNIIR ISKQRTDAEK CRNRTFITSD IRKEINEMNQ KVKEEWEKKH SGEEKNKEND TEKEDQRSNE
601: VKANKKDEDK ERAKAANVAV RAAVGGDDRF SKWKLMAEAR QRSSPGPGRN SKKLSGGTQF GKNQGLPKVV RSISVKDVIA VVEKEPQMSR STLLYRVYNR
701: ICSDV
Arabidopsis Description
TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.