Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU92338 | Sorghum | nucleus | 86.96 | 89.57 |
| Os03t0441000-01 | Rice | nucleus | 59.27 | 67.16 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 60.56 | 66.2 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 60.02 | 65.84 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 59.27 | 65.71 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 60.99 | 65.13 |
| CDX71498 | Canola | cytosol | 6.14 | 53.77 |
| CDX71499 | Canola | nucleus | 7.22 | 42.14 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 36.42 | 38.5 |
| CDY58727 | Canola | peroxisome | 4.09 | 38.38 |
| Bra033662.1-P | Field mustard | nucleus | 30.39 | 36.58 |
| CDY22365 | Canola | nucleus | 30.39 | 36.43 |
| CDY46486 | Canola | nucleus, plastid | 3.45 | 36.36 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 32.65 | 36.03 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 35.67 | 35.75 |
| Solyc04g078050.2.1 | Tomato | nucleus | 35.24 | 35.01 |
| Bra035961.1-P | Field mustard | nucleus | 29.31 | 34.92 |
| CDY25235 | Canola | nucleus | 29.53 | 34.82 |
| CDY30789 | Canola | mitochondrion | 30.5 | 34.77 |
| KRH61389 | Soybean | nucleus | 33.73 | 34.21 |
| Zm00001d039729_P004 | Maize | nucleus | 27.91 | 33.51 |
| KRH15434 | Soybean | nucleus | 33.62 | 33.37 |
| AT5G43130.2 | Thale cress | nucleus | 30.6 | 33.33 |
| KRH52077 | Soybean | nucleus | 32.97 | 32.8 |
| KRH05606 | Soybean | mitochondrion | 33.19 | 31.56 |
| CDY68956 | Canola | nucleus | 17.46 | 29.45 |
| AT1G27720.1 | Thale cress | nucleus | 22.41 | 28.89 |
| CDY60273 | Canola | nucleus | 21.66 | 27.99 |
| Zm00001d039731_P002 | Maize | nucleus | 14.76 | 26.05 |
| CDY03944 | Canola | nucleus | 22.95 | 25.06 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 20.37 | 23.54 |
| PGSC0003DMT400055395 | Potato | nucleus | 13.47 | 21.33 |
Protein Annotations
| EntrezGene:100278950 | MapMan:15.3.5.3.4 | UniProt:A0A1D6K665 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| ProteinID:ONL99064.1 | PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 | InterPro:RST |
| InterPro:TAF4 | UniParc:UPI000845387C | EnsemblPlantsGene:Zm00001d029598 | EnsemblPlants:Zm00001d029598_P003 | EnsemblPlants:Zm00001d029598_T003 | SEG:seg |
Description
Transcription initiation factor TFIID subunit 4b
Coordinates
chr1:-:78391061..78405511
Molecular Weight (calculated)
101965.0 Da
IEP (calculated)
9.296
GRAVY (calculated)
-0.765
Length
928 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIMKLLED DEDESLHSGA DVEAFTAALN REVEASASAS ASTSTSVPAG SSSQPTDHGA GLLPQEHKSL LNHDPGQWQD PVKNEIVNQE SQQQEQTHAF
101: RNDHPSRPEM VSQGSNNCPL PTNTPKECDL LKAKQEPGST SQQGIVAQHQ PMQQMKSEQT PIVSQQQSMQ QMKNQQTPVT NQTNSATTTA KAPVVTFHML
201: IPILSRYLDK ARDIEVQSIF AKLRKNEVSK EYFLKTVRNI VGDKLLKQAA SQYQMQAQRS PQTNPSNYSL SGQVSGQQTA PSGSVTGDEQ KGYPGAHTIP
301: MRQAIASTRP PQFRPSSSGQ MRSNTGYPPS QTNLHKANEM GNMSDGKGVH MLQTRPPNNS IPVQTMQHHV QRPQTSSPVF GANSIHARPF PRPLGGPAAP
401: FRPQMADSNP KAQLIQGAVT TVSGSVPTRS IVSGNAPGNQ STRQQSANKE QKTISFTRTA HMNNETVSQN SEFSQNSFAV MHAKQVNQAL GSSKVSAGME
501: SQSQQLSAPK PLAATSLSQT QSHGIQEEPK IQIQSSVQAP PAAASKTPQR KASSGQKKPL EVLGSSPPPS SKKQKVSGGF HEQSIDQLND VTAVSGVNLR
601: VDDFTCYVYW LCACHLPCST YYLMDFEGIT VCDFCQEEEE HLFSAPKEEG RVSEVARKVV QLEEEKLILQ KGPLTQKLAG IMSKCNLKVI GTDVERCLSM
701: CVEERLRGFI RSIIRFSKQR VEVEKSRHHF YPLSSDVRSH IMRVNREARE QWEKKQAEDA ERIRKQNDGD GNANVDLEKD RIETRGLSKH AKTYKEDDDK
801: MRTTAANVAA RVAAGGDDML SKWQLLAERN KQRSEGGDGS SGSVPGNMLQ HRPSLKSGKD LREEHEVEKR GYSTMLGSGG VRRSPLTKVA RSISMKDVVA
901: ALEREPQMSK SSLLFRLYGR PLTEPSAK
101: RNDHPSRPEM VSQGSNNCPL PTNTPKECDL LKAKQEPGST SQQGIVAQHQ PMQQMKSEQT PIVSQQQSMQ QMKNQQTPVT NQTNSATTTA KAPVVTFHML
201: IPILSRYLDK ARDIEVQSIF AKLRKNEVSK EYFLKTVRNI VGDKLLKQAA SQYQMQAQRS PQTNPSNYSL SGQVSGQQTA PSGSVTGDEQ KGYPGAHTIP
301: MRQAIASTRP PQFRPSSSGQ MRSNTGYPPS QTNLHKANEM GNMSDGKGVH MLQTRPPNNS IPVQTMQHHV QRPQTSSPVF GANSIHARPF PRPLGGPAAP
401: FRPQMADSNP KAQLIQGAVT TVSGSVPTRS IVSGNAPGNQ STRQQSANKE QKTISFTRTA HMNNETVSQN SEFSQNSFAV MHAKQVNQAL GSSKVSAGME
501: SQSQQLSAPK PLAATSLSQT QSHGIQEEPK IQIQSSVQAP PAAASKTPQR KASSGQKKPL EVLGSSPPPS SKKQKVSGGF HEQSIDQLND VTAVSGVNLR
601: VDDFTCYVYW LCACHLPCST YYLMDFEGIT VCDFCQEEEE HLFSAPKEEG RVSEVARKVV QLEEEKLILQ KGPLTQKLAG IMSKCNLKVI GTDVERCLSM
701: CVEERLRGFI RSIIRFSKQR VEVEKSRHHF YPLSSDVRSH IMRVNREARE QWEKKQAEDA ERIRKQNDGD GNANVDLEKD RIETRGLSKH AKTYKEDDDK
801: MRTTAANVAA RVAAGGDDML SKWQLLAERN KQRSEGGDGS SGSVPGNMLQ HRPSLKSGKD LREEHEVEKR GYSTMLGSGG VRRSPLTKVA RSISMKDVVA
901: ALEREPQMSK SSLLFRLYGR PLTEPSAK
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.