Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P03380_001 | Banana | nucleus | 61.95 | 59.34 |
| Os02t0654400-01 | Rice | nucleus | 36.5 | 42.17 |
| KXG31790 | Sorghum | nucleus | 35.67 | 40.65 |
| Zm00001d039729_P004 | Maize | nucleus | 35.55 | 38.68 |
| HORVU6Hr1G062340.1 | Barley | nucleus | 35.67 | 37.88 |
| Os03t0441000-01 | Rice | nucleus | 36.86 | 37.85 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 35.55 | 37.61 |
| TraesCS6A01G242900.1 | Wheat | nucleus | 35.55 | 37.56 |
| TraesCS6D01G225200.2 | Wheat | endoplasmic reticulum, nucleus, peroxisome, plastid | 35.55 | 35.68 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 35.08 | 35.24 |
| TraesCS4B01G150300.3 | Wheat | nucleus | 35.55 | 35.22 |
| OQU92338 | Sorghum | nucleus | 37.22 | 34.74 |
| TraesCS4D01G160000.1 | Wheat | nucleus | 34.72 | 34.52 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 34.36 | 33.26 |
| Zm00001d029598_P003 | Maize | nucleus | 36.03 | 32.65 |
| Zm00001d039731_P002 | Maize | nucleus | 16.65 | 26.62 |
| GSMUA_Achr4P14200_001 | Banana | cytosol | 1.31 | 16.18 |
Protein Annotations
| MapMan:15.3.5.3.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G14210_001 | EnsemblPlants:GSMUA_Achr4P14210_001 | EnsemblPlants:GSMUA_Achr4T14210_001 | UniProt:M0SNT6 |
| PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 | InterPro:RST | InterPro:TAF4 |
| UniParc:UPI0002967DDD | SEG:seg | : | : | : | : |
Description
transcription initiation factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G14210_001]
Coordinates
chr4:+:10629052..10636559
Molecular Weight (calculated)
92970.2 Da
IEP (calculated)
9.924
GRAVY (calculated)
-0.856
Length
841 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPNLKMNKL VTDQNMTDCL FQQEASQKQS ETNSLQFVDK EQVKKLEQSN ILESNTAEGP KQEVTQQSEN LHQQNIAQQS NKQIPTTNLA SISSNHSEGH
101: QQHVVQQSNT QQIPPSNQAN LVMRKTKAAS SIPFQMLIPI LQPHLDKDRS MQLQAIFTKL RNNEVSKEDF LRATRNIVGD QMLRQAAQKI QMQATSHSMP
201: QSQNLKANGS PPRQPYVPST TFQVHPGTSF TSPRNNTKKS QEVETGSDGK GPHSVQNFTN NTNMANPERD VSIVSLQSVN KQQQATHIPQ SSFSISGSTS
301: GYHTHAYPRP SVSSSTSPRP SNVDSHTRQV SRTQGVVSTQ IRPTQSTNIM NVPKYDQNAA NESKRQQAGP STSHFASQHN PLARQLDANK EQNDSGFKSM
401: AYVKQEVVDQ SSEPPNKSHI VPSGVTSLRT AHVNQKNSAL GSSSMMGTTQ VSGPVPIQTD QSVQVSNCNF NYWMHSQVSS ATLPLSGATM KTPSKKPTVG
501: QKKPLEALGS SPPMSSKRQK TSGTSIDQSI EQLNDVTAVS GVDLREEEEQ LLSGLKEENQ TSEATRRVVQ EEEERLLLQQ ASLRKKLSDI MFKCSLKNIG
601: GDVERCLSMC VEERLKGLIC YLIRLSKQRV DLEKSRHRFV ITSDVRHQIL LMNQKAKEEW DKKQAEECDK LRKVNEMDGS AGVDAEKDKE EGRSKTLKAN
701: KEEDDKMRAT AANVAARAAV GGDDMLSKWQ LMAEQARQKR DGVDGASGSQ QGKSASSKSL LSSGRGSKEK QEFEKKGSSA FCTSGSMRRF GRNSPQASHP
801: KVARKISVKD VIAALETEPQ MSKSSLIYRL YERLSGDSPV E
101: QQHVVQQSNT QQIPPSNQAN LVMRKTKAAS SIPFQMLIPI LQPHLDKDRS MQLQAIFTKL RNNEVSKEDF LRATRNIVGD QMLRQAAQKI QMQATSHSMP
201: QSQNLKANGS PPRQPYVPST TFQVHPGTSF TSPRNNTKKS QEVETGSDGK GPHSVQNFTN NTNMANPERD VSIVSLQSVN KQQQATHIPQ SSFSISGSTS
301: GYHTHAYPRP SVSSSTSPRP SNVDSHTRQV SRTQGVVSTQ IRPTQSTNIM NVPKYDQNAA NESKRQQAGP STSHFASQHN PLARQLDANK EQNDSGFKSM
401: AYVKQEVVDQ SSEPPNKSHI VPSGVTSLRT AHVNQKNSAL GSSSMMGTTQ VSGPVPIQTD QSVQVSNCNF NYWMHSQVSS ATLPLSGATM KTPSKKPTVG
501: QKKPLEALGS SPPMSSKRQK TSGTSIDQSI EQLNDVTAVS GVDLREEEEQ LLSGLKEENQ TSEATRRVVQ EEEERLLLQQ ASLRKKLSDI MFKCSLKNIG
601: GDVERCLSMC VEERLKGLIC YLIRLSKQRV DLEKSRHRFV ITSDVRHQIL LMNQKAKEEW DKKQAEECDK LRKVNEMDGS AGVDAEKDKE EGRSKTLKAN
701: KEEDDKMRAT AANVAARAAV GGDDMLSKWQ LMAEQARQKR DGVDGASGSQ QGKSASSKSL LSSGRGSKEK QEFEKKGSSA FCTSGSMRRF GRNSPQASHP
801: KVARKISVKD VIAALETEPQ MSKSSLIYRL YERLSGDSPV E
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.