Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58727 | Canola | peroxisome | 32.35 | 22.22 |
| CDY68956 | Canola | nucleus | 47.06 | 5.82 |
| PGSC0003DMT400055395 | Potato | nucleus | 38.24 | 4.44 |
| Bra033662.1-P | Field mustard | nucleus | 48.53 | 4.28 |
| CDY22365 | Canola | nucleus | 48.53 | 4.26 |
| Bra035961.1-P | Field mustard | nucleus | 48.53 | 4.24 |
| CDY25235 | Canola | nucleus | 48.53 | 4.19 |
| CDY30789 | Canola | mitochondrion | 50.0 | 4.18 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 51.47 | 3.99 |
| AT5G43130.2 | Thale cress | nucleus | 48.53 | 3.87 |
| CDY60273 | Canola | nucleus | 39.71 | 3.76 |
| KRH61389 | Soybean | nucleus | 48.53 | 3.61 |
| KRH52077 | Soybean | nucleus | 48.53 | 3.54 |
| Solyc04g078050.2.1 | Tomato | nucleus | 47.06 | 3.43 |
| KRH15434 | Soybean | nucleus | 44.12 | 3.21 |
| CDY03944 | Canola | nucleus | 39.71 | 3.18 |
| KRH05606 | Soybean | mitochondrion | 45.59 | 3.18 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 42.65 | 3.13 |
| AT1G27720.1 | Thale cress | nucleus | 27.94 | 2.64 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 25.0 | 2.12 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 16.18 | 1.31 |
| CDY46486 | Canola | nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14200_001 | EnsemblPlants:GSMUA_Achr4T14200_001 | EnsemblPlantsGene:GSMUA_Achr4G14200_001 | UniParc:UPI000295BFE5 | UniProt:M0SNT5 | MapMan:35.2 |
Description
Transcription initiation factor, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G14200_001]
Coordinates
chr4:+:10622906..10623278
Molecular Weight (calculated)
7291.5 Da
IEP (calculated)
3.506
GRAVY (calculated)
-0.016
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MDPSIMKLLE EDEDESMHSG ADVEALSAEL NRDIGGEPAA IVQPPESDAG EAVVFISVTL FFMPSWPA
001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTESSC GVGIVYRVSS SRFWFAMMSF
801: GFLFAGGRRV GKNQGSSLQP KVVRTISVKD VVAVLEREPQ MSKSTLMYRL IQ
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTESSC GVGIVYRVSS SRFWFAMMSF
801: GFLFAGGRRV GKNQGSSLQP KVVRTISVKD VVAVLEREPQ MSKSTLMYRL IQ
Arabidopsis Description
TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.